BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357912
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56950.1 | Symbols: NFA03, NFA3, NAP1;3 | nucleosome assembl... 1895 0.0
AT4G26110.1 | Symbols: NAP1;1, ATNAP1;1 | nucleosome assembly p... 1109 0.0
> AT5G56950.1 | Symbols: NFA03, NFA3, NAP1;3 | nucleosome assembly
protein 1;3 | chr5:23032449-23035661 FORWARD LENGTH=1656
Length=1656
Score = 1895 bits (1026), Expect = 0.0
Identities = 1094/1127 (97%), Gaps = 3/1127 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAACGATAAGGACAATTTCAATGTCAGCGATCTCACTGCTGCTCTTAAAGATGAG 60
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 170 ATGAGCAACGATAAGGACAGTTTCAATGTCAGCGATCTCACTTCTGCTCTTAAAGATGAG 229
Query 61 GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGTTGCAGAATCTAGCTGGACAACAT 120
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 230 GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGCTCCAGAATCTAGCTGGACAACAT 289
Query 121 TCCGATGTGCTCGAGAATCTGACTCCTAAAATCAGAAGACGTGTTGAGGTTTTACGCGAG 180
|| ||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 290 TCTGATGTGCTCGAGAATCTGACTCCTAAAATTAGAAGGCGTGTTGAGGTTTTGCGGGAG 349
Query 181 ATTCAGGGCAAACATGATGAAATAGAGACGAAATTCCGCGAGGAGAGAGCTGCTCTTGAA 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 350 ATTCAGGGCAAACATGATGAAATAGAGACAAAATTCCGCGAGGAGAGAGCTGCTCTTGAA 409
Query 241 GCCAAGTATCAAAAGTTATATCAGCCTTTGTATACCAAGCGTTATGAGATTGTGAATGGA 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 410 GCCAAGTATCAAAAGTTATATCAGCCTTTGTATAACAAGCGTTATGAGATTGTGAATGGA 469
Query 301 GCTACTGAAGTTGAAGGGGCTCCAGATGATGCTAAGATGGACCATGGAGATGAGAAAACT 360
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 470 GCTACTGAAGTTGAAGGGGCTCCAGAGGATGCTAAGATGGACCAAGGAGACGAGAAAACT 529
Query 361 GCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACCGCTCTGAAAAACAATGATGTTATT 420
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 530 GCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACTGCTCTGAAAAATAATGATGTTATA 589
Query 421 TCTGAGGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGG 480
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TCTGAAGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATATCAAGTGG 649
Query 481 TGCAAGATTGAAGAACCAAAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TGCAAGATTGAAGAACCAAAGGGATTCAAACTTGAGTTTTTCTTCGACCAGAATCCTTAC 709
Query 541 TTCAAAAACACCCTATTAACAAAGGCATATCATATGATTGATGAAGATGAGCCTCTGCTT 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 710 TTCAAAAACACCCTATTAACAAAGGCGTATCATATGATTGATGAAGATGAGCCTCTGCTT 769
Query 601 GAGAAGGCTATTGGGACGGAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATT 660
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GAGAAGGCTATTGGGACAGAGATTGATTGGTATCCTGGAAAATGCTTAACTCAGAAGATT 829
Query 661 CTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCAAAACTGAAGAT 889
Query 721 TGTGAAAGCTTTTTCAACTTCTTCAATCCTCCCCAAGTTCCCGATGATGATGAAGACATT 780
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 890 TGTGAAAGCTTCTTCAACTTCTTCAATCCTCCCCAAGTTCCTGATGATGATGAAGACATT 949
Query 781 GACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATGACATTGGTTCT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATGACATTGGTTCT 1009
Query 841 ACAATCCGGGAGAAGATTATACCTCATGCTGTCTCATGGTTTACTGGTGAGGCTATTGAG 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 ACAATCCGGGAGAAGATCATACCTCATGCTGTCTCATGGTTTACTGGTGAGGCTATTGAG 1069
Query 901 GGAGAGGAGTTTGAAATAGACAatgacgatgaagatgatatcgatgaggatgaagatgag 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GGAGAGGAGTTTGAAATAGACAATGACGATGAAGATGATATCGATGAGGATGAAGATGAG 1129
Query 961 gatgaagaagatgaagacgaagatgaggaagaagacgatgatgaagatgaggaggaagaa 1020
|||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 1130 GATGAAGAAGATGAAGACGAAGATGAGGAAGAAGACGACGA--A-GATGAGGAGGAAGAA 1186
Query 1021 gtaagcaagaCCAAAAAGAAGCCGTCAGTCTTACACAAGAAAGGAGGGAGACCTCAGCTT 1080
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1187 GTAAGCAAGACCAAAAAGAAGCCATCAGTCTTACACAAGAAAGGAGGGAGACCTCAGGTT 1246
Query 1081 AACGATGGTCAGCAAGGAGAGAGGCCTCCTGAATGCAAGCAACAGTA 1127
| ||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 1247 ACCGATGATCAACAAGGAGAGAGGCCTCCTGAATGCAAACAACAGTA 1293
> AT4G26110.1 | Symbols: NAP1;1, ATNAP1;1 | nucleosome assembly
protein1;1 | chr4:13232595-13235879 FORWARD LENGTH=1613
Length=1613
Score = 1109 bits (600), Expect = 0.0
Identities = 968/1142 (85%), Gaps = 39/1142 (3%)
Strand=Plus/Plus
Query 1 ATGAGCAACGATAAGGACAATTTCAATGTCAGCGATCTCACTGCTGCTCTTAAAGATGAG 60
||||||||||| ||||| | ||||| ||| |||||| |||||||||||||| || |||
Sbjct 118 ATGAGCAACGACAAGGATAGCTTCAACGTCTCCGATCTTACTGCTGCTCTTAAGGACGAG 177
Query 61 GATCGAGCTGGTCTTGTCAACGCTCTTAAGAACAAGTTGCAGAATCTAGCTGGACAACAT 120
||||||||||| |||||||| ||||| ||||||||| |||||||||| ||||| || | |
Sbjct 178 GATCGAGCTGGCCTTGTCAATGCTCTAAAGAACAAGCTGCAGAATCTGGCTGGTCAGCGT 237
Query 121 TCCGATGTGCTCGAGAATCTGACTCCTAAAATCAG-AAGACGTGTTGA-GGTTTTACGCG 178
|| ||||||||||||||||||||||| || | || ||| || ||||| | || | | |
Sbjct 238 TCTGATGTGCTCGAGAATCTGACTCCCAATGTGAGAAAG-CGCGTTGATGCCTTGA-GGG 295
Query 179 AGATTCAGGGCAAACATGATGAAATAGAGACGAAATTCCGCGAGGAGAGAGCTGCTCTTG 238
| || ||| || ||||||||||| ||||| | |||||||| |||||||||||| |||||
Sbjct 296 ATATACAGAGCCAACATGATGAACTAGAGGCAAAATTCCGTGAGGAGAGAGCTATTCTTG 355
Query 239 AAGCCAAGTATCAAAAGTTATATCAGCCTTTGTATACCAAGCGTTATGAGATTGTGAATG 298
||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||||
Sbjct 356 AAGCCAAGTATCAAACGCTGTATCAGCCTTTGTATGTCAAGCGTTATGAGATTGTGAATG 415
Query 299 G-AGCTACTGAAGTTGAAGGGGCTCC--A-GATGATGCTAAGATGGACCATGGAGATGAG 354
| | |||||||||||||| |||||| | |||||| | ||| ||||||| ||||| |||
Sbjct 416 GCA-CTACTGAAGTTGAACTGGCTCCAGAGGATGATACCAAGGTGGACCAAGGAGAGGAG 474
Query 355 AAAACTGCAGAAGAGAAAGGAGTCCCTAGTTTCTGGCTGACCGCTCTGAAAAACAATGAT 414
||||||||||||||||||||||| || |||||||||||||| ||||||||||| || |||
Sbjct 475 AAAACTGCAGAAGAGAAAGGAGTTCCAAGTTTCTGGCTGACAGCTCTGAAAAATAACGAT 534
Query 415 GTTATTTCTGAGGAGATCACAGAGCGTGATGAAGGAGCCCTTATATATCTTAAAGATATC 474
|||||||| |||||| ||||||||||||||||||| || || | |||||||||||||||
Sbjct 535 GTTATTTCCGAGGAGGTCACAGAGCGTGATGAAGGGGCTCTCAAATATCTTAAAGATATT 594
Query 475 AAGTGGTGCAAGATTGAAGAACC-AAAGGGATTCAAACTTGAGTTTTTCTTCGACCA-GA 532
|||||||||||||||||||| || ||| ||||||||||||||||||||||| || || ||
Sbjct 595 AAGTGGTGCAAGATTGAAGAGCCTAAA-GGATTCAAACTTGAGTTTTTCTTTGA-CACGA 652
Query 533 ATCCTTACTTCAAAAACACCCTATTAACAAAGGCATATCATATGATTGATGAAGATGAGC 592
|||| || || || ||||| | || |||||| | |||||||||||||||||||||||||
Sbjct 653 ATCCGTATTTTAAGAACACTGTCTTGACAAAGTCTTATCATATGATTGATGAAGATGAGC 712
Query 593 CTCTGCTTGAGAAGGCTATTGGGACGGAGATTGATTGGTATCCTGGAAAATGCT-TAACT 651
| ||||||||||||||||| ||||| || |||||||||||||||||||| || | |||||
Sbjct 713 CACTGCTTGAGAAGGCTATGGGGACAGAAATTGATTGGTATCCTGGAAAGTG-TCTAACT 771
Query 652 CAGAAGATTCTTAAGAAGAAGCCTAAGAAAGGTGCAAAGAATGCCAAGCCAATTACCAAA 711
||||||||||| ||||||||||||||||||||| |||||||| | || ||||| ||| ||
Sbjct 772 CAGAAGATTCTCAAGAAGAAGCCTAAGAAAGGTTCAAAGAATACTAAACCAATCACC-AA 830
Query 712 ACT-GAAGATTGTGAAAGCTTTTTCAACTTCTTCAATCCTCCCCAAGTTCCCGATGATGA 770
||| ||||||||||||||||| ||||||||||| | |||||| ||||||| ||||| ||
Sbjct 831 ACTCGAAGATTGTGAAAGCTTCTTCAACTTCTTTAGTCCTCCAGAAGTTCCGGATGAAGA 890
Query 771 TGAAGACATTGACGAAGAAAGAGCCGAGGAACTTCAGAATCTGATGGAACAAGATTATGA 830
|||||| || ||||| |||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 891 TGAAGATATCGACGAGGAAAGAGCTGAGGATCTTCAAAACCTGATGGAACAAGATTATGA 950
Query 831 CATTGGTTCTACAATCCGGGAGAAGATTATACCTCATGCTGTCTCATGGTTTACTGGTGA 890
||| || ||||| || ||||| |||||||| |||| ||||||||||||||||||||||||
Sbjct 951 CATCGGATCTACTATTCGGGAAAAGATTATTCCTCGTGCTGTCTCATGGTTTACTGGTGA 1010
Query 891 GGCTATTGAGGGAGAGGAGTTTGAAATAGACAatgacgatgaagatgatatcgatgagga 950
|||||| || | |||||| ||||||||||| | || || |||||||| || ||||||||
Sbjct 1011 GGCTATGGAAGCAGAGGATTTTGAAATAGATGACGATGAGGAAGATGACATTGATGAGGA 1070
Query 951 tgaagatgaggatgaagaagatgaagacgaagatgaggaagaagacgatgatgaagatga 1010
|||||||||||| | || || | || | |||||||| | ||||||||||| |||
Sbjct 1071 TGAAGATGAGGA--A-GACGA--A-GA-G--GATGAGGA-G--GACGATGATGA---TGA 1115
Query 1011 ggaggaagaagtaagcaagaCCAAAAAGAAGCCGTCAGTCTTACA-CAAGAAAGGAGGGA 1069
||| ||||||| ||||||||||||||||||||| ||| || || |||||| |||||||
Sbjct 1116 GGATGAAGAAGAAAGCAAGACCAAAAAGAAGCCATCAATCGG-CAACAAGAAGGGAGGGA 1174
Query 1070 GACCTCAGCT--TAAC-GATGGTCAGCAAGGA-GAGAGGCCTCCTGAATGCAAGCAACAG 1125
|| ||||| | | || ||| | |||| | |||||||| || |||||||||||||||
Sbjct 1175 GATCTCAGATAGTTGGTGAAGGTAAACAAG-ATGAGAGGCCACCCGAATGCAAGCAACAG 1233
Query 1126 TA 1127
||
Sbjct 1234 TA 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5