BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357916
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56990.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 763 0.0
> AT5G56990.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Cystatin/monellin superfamily protein (TAIR:AT5G56920.1);
Has 38 Blast hits to 38 proteins in 2 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:23060872-23062311
REVERSE LENGTH=883
Length=883
Score = 763 bits (413), Expect = 0.0
Identities = 617/711 (87%), Gaps = 32/711 (5%)
Strand=Plus/Plus
Query 1 ATGTCCGATTCTG-TGTTGACGGAGTATATGCACACTCCGAAGAAGCCGAGGTTGGAAAA 59
||| ||| ||| | ||| ||||| | || | |||| || |||||||||||||||||| ||
Sbjct 1 ATGGCCGGTTC-GTTGTCGACGGGGGATTTTCACATTCGGAAGAAGCCGAGGTTGGAGAA 59
Query 60 ATCCTCCGGAGAATCGAA-TTCCGCCTCCACACGCAAACAACTCCGGAAG-TACGATCCG 117
|| |||| | ||||| || || || || |||| | | |||||||| || ||||| ||
Sbjct 60 ATTCTCCAGCGAATC-AAGTTACGGCTACACATTCCGAGAACTCCGG-AGATACGACCCT 117
Query 118 TACGACGATGAATACATACGACAGTACATCTTATACTACTATCAGTTCCATAAGAGCGAG 177
||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||
Sbjct 118 TACGACGATGAATACGTACGACAGTACATCTTATACTAC---CAGTACCATAAGAGCGAG 174
Query 178 GGTTTCGTGATTGATTGGGATAAATTGGATTTTCGGTTCGAGACTAGGCCTATCATGGAC 237
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 GGTTTCGTGATTGATTGGGATAAATTGGATTTTCGGTTCGAGACTAGGCCTATCATGGAT 234
Query 238 CCATAT-CGTATAGCTGCT-TACAGTACCAATGATGAATTAATCCGTGGTGTGGCT-TGC 294
|||| | ||| | | || | | |||||||||||||||| | |||| ||| |||||| | |
Sbjct 235 CCAT-TCCGTCTTGATG-TGTGCAGTACCAATGATGAAATGATCCATGGCGTGGCTCT-C 291
Query 295 CGTGCCATTGCCCAACACAATGTAGATACAGTTAGTGTGTCTTCTTCGGGAAGTCGGATT 354
||||| ||| |||| | | ||| | ||| | | | ||||||||||||||
Sbjct 292 CGTGCTATT-----ACAC-----A-ACACA---A-TGT-T-TGATACGGGAAGTCGGATT 334
Query 355 GAGTTCGTCGATCATGTTTCGGCAAGTTACAGGTGGTGTGCTGGTATACTTTATTGGGTA 414
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 GAGTTGGTCGATCACGTGTCGGCAAGTTACAGGTGGTGTGCTGGTATACTTTATTGGGTA 394
Query 415 ACGTTTTGGGCTCGGGATTTGGCATCATCCAATCCTGAGCCTAAACTTTATCAAGCTAAT 474
||||||| ||||||||||||||| |||||| |||| ||||||| |||||||||||||||
Sbjct 395 ACGTTTTTGGCTCGGGATTTGGCCTCATCCGATCCCGAGCCTAGACTTTATCAAGCTAAA 454
Query 475 GTTCGCCTCTGTGGACCAACGTTCTGTGAGATTTATATCTTCAGGCTCAAACCAACTGAT 534
||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 455 GTTCGTCTCTGTGGACCAACGTTCTGTCAGATTTATATCTTCAGGCTCAGACCAACTGAT 514
Query 535 GAAGAGATTGCTGCTGTTCAAGTGGATCCTCCTCCTCCATTGTATGATGATGACCCAGAG 594
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 515 GAAGAGATTGCTGCAGTTCAAGTGGATCCCCCTCCTCCATTGTATGATGATGACCCAGAG 574
Query 595 TTACCCACCATACTTTTCACTGTAACGGGTCCAGGATCTGGTTACATGTCCATACCTGAA 654
||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||| |||
Sbjct 575 TTACCCACCATACTTTTCACTGTGACTGGTCCAGGATCGGGTTACATGTCTATACCCGAA 634
Query 655 GTTTCCTTCACTCGAATTCCTGCTGAAGTTGAGCCTGTGTCGTCACCATAA 705
|||| ||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 635 GTTTTCTTCACTCGGATTCCTGCAGAAGTTGAGCCCGTGTCGTCACCATAA 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5