BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg357944

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G57230.1 | Symbols:  | Thioredoxin superfamily protein | chr...   787    0.0  


> AT5G57230.1 | Symbols:  | Thioredoxin superfamily protein | chr5:23189994-23191617 
FORWARD LENGTH=692
Length=692

 Score =  787 bits (426),  Expect = 0.0
 Identities = 464/483 (96%), Gaps = 0/483 (0%)
 Strand=Plus/Plus

Query  1    ATGGGAGATTCAACATTTCTCGATAGAATGCTTCTCCAGCTTCGCTCAACTTGCAAGTAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  78   ATGGGAGATTCAACATTTCTCGATAGAATGCTTCTCCAGCTTCGCTCCACTTGCAAGTAT  137

Query  61   TATAGTGGTTACCCTAAGGATCTCGGGCCATCACGGGTTCTGCATTTTACATCAGAAAGA  120
            || || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  138  TACAGCGGTTACCCTAAGGATCTCGGGCCATCGCGGGTTCTCCATTTTACATCAGAAAGA  197

Query  121  GAGTTTGTCCAACTCCTTCACCAGGGCTATCCCGTGGTTGTTGCATTCACCATAAGAAGT  180
            |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct  198  GAGTTTGTCCAACTCCTTCACCAGGGCTATCCTGTGGTTGTCGCATTCACCATAAGGAGT  257

Query  181  AACTACACGCAACATCTTGACCGGATGCTTGAGGAAGCTGCTGCTGAGTTCTATCCCAAC  240
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  258  AACTACACACAACATCTTGACCGGATGCTTGAGGAAGCTGCTGCTGAGTTCTATCCCAAC  317

Query  241  ATTAAATTTATGCGTGTTGAGTGCCCCAAGTATCCTGGATTCTGCATAACTCGCCAGAAA  300
            || |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct  318  ATAAAATTTATGCGTGTTGAGTGTCCCAAGTATCCCGGATTCTGCATAACTCGCCAGAAA  377

Query  301  AGTGAATATCCTTTCATTGAAATATTCCATAGCCCACAACAAGCGGGTAATGAAGGAAAG  360
            | ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| 
Sbjct  378  AATGAATATCCTTTCATTGAAATATTCCATAGCCCACAACATGCCGGTAATGAAGGAAAA  437

Query  361  GTACAGGATCCAAATATCACTCGGTATTCTGTGAAAGTTGTACCTTACAATTATGATATG  420
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  438  GTACAGGATCCAAATATCACTCGGTATTCAGTGAAAGTTGTACCTTACAATTATGATATG  497

Query  421  AGTCCCTATGGATTCAGAGAATTCTTCAAGCGCCAGGGGGTTCGTACTTCGGATCCCAAA  480
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  498  AGTCCCTACGGATTCAGAGAATTCTTTAAGCGCCAGGGGGTTCGTACTTCGGATCCCAAA  557

Query  481  TGA  483
            |||
Sbjct  558  TGA  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5