BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg357995
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57770.1 | Symbols: | Plant protein of unknown function (DU... 1910 0.0
AT5G57760.1 | Symbols: | unknown protein; Has 5 Blast hits to ... 279 3e-74
> AT5G57770.1 | Symbols: | Plant protein of unknown function (DUF828)
with plant pleckstrin homology-like region | chr5:23400864-23403130
REVERSE LENGTH=1469
Length=1469
Score = 1910 bits (1034), Expect = 0.0
Identities = 1170/1234 (95%), Gaps = 15/1234 (1%)
Strand=Plus/Plus
Query 1 ATGGAACTATCATTAGCATTAACATCAACAGACCATAATCCATCGCCTTCAGAGGCACAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 ATGGAACTATCATTAGCATTAACATCAACAGACCATAATCCATCGCCTTCAGAGGCACAT 78
Query 61 CCAGACACTATGGACTTCCTGTCTCGAGAATGGTGTAATTTCGCTGTTCAATCACTTCAT 120
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CCAGATACTATGGACTTTCTGTCTCGAGAATGGTGTAATTTCGCTGTTCAATCACTTCAT 138
Query 121 CCCGACCCTATCCTCTACGATCGTTCCATTGTTCCCGTCGAGACATCGATCGCCAAGTTT 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 CCAGACCCTATCCTCTACGATCGTTCCATTGTTCCCGTCGAGACATCGATCGCCAAGTTT 198
Query 181 CAAGGCGACTCGAGTCCTGTTTCTTGTGCTATGATGGATAAGAGCATGAAGATGGAAGAT 240
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 199 CAAGGCGACTCAAGTCCTGTTTCTTGTGCTATGATGGATACGAGCATGAAGATGGACGAT 258
Query 241 CCAGATTTTAAGCCCTCGATGGCTTCATGGAAAACCAATGATGTCAAGTCATGGATATGG 300
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 259 CCAGATTTTAAGCCCTCGATGCCTTCATGGAAAACCAATGATGTGAAGTCATGGATATGG 318
Query 301 ATGCAACAAGCAATGCACCCGGAATTGAGCTACGAAGGCGTTTTCCGCAAGAAACTTGTA 360
||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 319 ATGCAACAAGCAATGCACCCGGAATTGAGCTACGAAGGCTTTTTCCGCAAG--A-----A 371
Query 361 ATTGGCCATTTGAAACTTCCATGGAAGATTACGCCGTCGATAAAGAAATGGTGGAAAGAG 420
| | || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 372 A-----C--TT-AAACTTCCATGGAAAATTACGCCGTCGATAAAGAAATGGTGGAAAGAG 423
Query 421 ATAAAGGCGAAACGAAAGGAAGAAGTGAGGCTACAGAGAGCTGAAGTTCACGCTGCCGTT 480
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 424 ATAAAGGCGAAACGAAAGGAAGAAGTGAGGCTACAGAGAGCTGAAGTCCACGCCGCCGTG 483
Query 481 TCCTTGGCTGGTCTAGCGGCTGCTCTCGCCGCCGTAGCTTCCGAGAACGCCGGAAAAGAT 540
|| ||||||||||| || ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 484 TCATTGGCTGGTCTTGCCGCTGCTCTCGCCGCCGTGGCTTCAGAGAACGCTGGAAAAGAT 543
Query 541 GGTGGAAACGGTCGACCGAGCACGAGGGAGACTGCTGTGGCTTCTGCAGCGGCTGTGGTG 600
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 544 GGTGGAAACGGTCGACCTAGCACGAGGGAGACTGCTGTGGCTTCTGCTGCGGCTGTGGTG 603
Query 601 GCGGCGCAGTGTGCGCAGATGGCAGAGACAATGGGAGCAAACAGAGATCAGCTCAGCACA 660
||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 604 GCGGCACAATGTGCGCAAATGGCAGAGACAATGGGAGCAAACAGAGACCAGCTCAGCACG 663
Query 661 ATGATTGGTTCGGCCATGACCGGGACAAGTGTCAGTGAGATACTCACTCTCACTGCCTCA 720
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 664 ATGATTGGTTCAGCCATGACCGGGACAAGTGTTAGTGAGATACTCACTCTCACTGCCTCA 723
Query 721 GCTACAACTTCGTTGAGAGGTGCTGCGACGCTGAAAGCAAGAAGAGGTTGCAAGATCAAT 780
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 724 GCTACAACTTCGTTGAGAGGTGCCGCGACGCTGAAAGCAAGAAGAGGTTGCAAGATTAAT 783
Query 781 AGATTGAATGGCTCTGCTCCTGTGTTGCCTATCGAAGACTCTTCTTATTTGCCTCCTGAA 840
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 784 AGATTGAATGGCTCTGCACCTGTGTTGCCTATTGAAGACTCTTCTTATTTGCCTCCTGAA 843
Query 841 TTCGACAAGAACATATCTGTTCTTGCTAAAGGAACCGATCTCTTCGTTGAAACACCAGAT 900
||||| ||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||
Sbjct 844 TTCGATAAGAACACATCTGTTCTTGCTAAGGGAACAGATCTCTTCGTCGAGACACCAGAT 903
Query 901 GGGGATTTCAAGGCTAGGACAGTGTCTATGGTCTTAAACAAAGATGGAAAGGTGATTCTC 960
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 904 GGGGATTTCAAGGCTAGGACGGTTTCTATGGTCTTAAACAAAGATGGAAAGGTGATTCTT 963
Query 961 AAAATGAAGAAACATAACCTACTCAGGACTAAGAAAGAAAGTATTGTGACGAATGTTCAT 1020
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AAAATGAAGAAACATAATCTACTCAGGACTAAGAAAGAAAGTATTGTGACGAATGTTCAT 1023
Query 1021 GTGGAACTTTACAAAGATTCAGATAGCGAAGACAACAACATAGAAGACACTTGTTATCTC 1080
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1024 GTGGAACTTTACAAAGATTCAGATAGCGAAGACAACAACATAGAGGACACTTGTTATCTC 1083
Query 1081 ATTGTCCTGAGGACGAACAGAGGAGCTATCAAGCTAGACATGGCCGATGATTACAGTCGT 1140
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||
Sbjct 1084 ATTGTCCTGAGGACGAACAGAGGAGCTATCAAGTTAGACATGGCCGACGATTACAATCGT 1143
Query 1141 TACAAGACATGGGTCACAACGATACAACACATGCTCACTCTCTCTTCTTCCTCCTTAAGC 1200
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1144 TACAAGACATGGGTCACAACGATCCAACACATGCTCACTCTCTCTTCTTCCTCCTTAAGT 1203
Query 1201 ACAAATTACGCACTCACTTTCTACAACAAAAACT 1234
||||||||||| ||||||||||||||||||||||
Sbjct 1204 ACAAATTACGCTCTCACTTTCTACAACAAAAACT 1237
> AT5G57760.1 | Symbols: | unknown protein; Has 5 Blast hits to
5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:23400715-23401267 FORWARD LENGTH=553
Length=553
Score = 279 bits (151), Expect = 3e-74
Identities = 163/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 1066 GACACTTGTTATCTCATTGTCCTGAGGACGAACAGAGGAGCTATCAAGCTAGACATGGCC 1125
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 550 GACACTTGTTATCTCATTGTCCTGAGGACGAACAGAGGAGCTATCAAGTTAGACATGGCC 491
Query 1126 GATGATTACAGTCGTTACAAGACATGGGTCACAACGATACAACACATGCTCACTCTCTCT 1185
|| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 490 GACGATTACAATCGTTACAAGACATGGGTCACAACGATCCAACACATGCTCACTCTCTCT 431
Query 1186 TCTTCCTCCTTAAGCACAAATTACGCACTCACTTTCTACAACAAAAACT 1234
|||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 430 TCTTCCTCCTTAAGTACAAATTACGCTCTCACTTTCTACAACAAAAACT 382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5