BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358000
Length=489
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57820.1 | Symbols: | zinc ion binding | chr5:23428601-2342... 691 0.0
> AT5G57820.1 | Symbols: | zinc ion binding | chr5:23428601-23429346
FORWARD LENGTH=667
Length=667
Score = 691 bits (374), Expect = 0.0
Identities = 448/483 (93%), Gaps = 7/483 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCGAAAGCAAGAGACGATGAAAAAACGCTAAACTTGGATTCGAAAGCAAAAGAC 60
|||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||| ||
Sbjct 1 ATGGATTCGAAAGCAAAAGACGATGAAAAAACTCTAAACATGGATTCCAAAGCAAAATAC 60
Query 61 GGTGAAGAAGCTCTAAACATGCTCTTAAAGCTTCAACAGAGAGTTGATAAAATCCATTCT 120
||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 GGTAAAGAAGCTCTAGACATGCTCTTAAAGCTTCAACAGAGAGTTGATGAAATCCATTCT 120
Query 121 GAGTTGCAATCTTCGGGAACATCCGCAACAACTTCATCTGATATTCAAAACATCTACGAC 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GAGTTGCAATCTTCGGGAGCATCCGCAACAACTTCATCTGATATTCAAAACATCTACAAC 180
Query 181 GAAATCCAACAAGTTCT-CA-A-GATGACTACGAAGACGCCTCAAGATTCGAGTAAAGTG 237
|||||||||||| |||| || | ||| |||| |||||||||||||||| |||||||||||
Sbjct 181 GAAATCCAACAACTTCTACAGATGATTACTAAGAAGACGCCTCAAGATCCGAGTAAAGTG 240
Query 238 TCGCCACATATTCGCGACGAGCTTGACATGGTGTTTGTTGT-GGAGGAAGTTGGACACTC 296
||| |||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 241 TCGTCACATATTCGCGACGATCTTGACATGGTGTTTGT-GTTGGAGGAAGTTGGACACTC 299
Query 297 GTGCGACTTATGCCAGAGAGATCTCGC-AACGGATCCAGAACGGCCTAATGCTCCCTTGC 355
||||||||| |||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct 300 GTGCGACTTGTGCCAGAGAGATCTTGCTAA-GGATCCAGAACGGCCTAATGCTTCCTTGA 358
Query 356 GCGGCTTACAAGAGGCGTCCGTGCTGTCTTGTGGTCATGTCTATCACTTCAAGTGCTTGA 415
| |||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||
Sbjct 359 GTGGCTTACAAGAGGCGTGCGTGCTGTCTTGTGGTCATGTCTACCACTTCAAGTGTTTGA 418
Query 416 AAGGAACCACTCTTGATATCGATAACCATTCTAATGATCCTTCCTGCATTTTCTGCATTA 475
|||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 419 GAGGAACCACTCTTGATATTGATAACCATTCTAAAGATCCTTCTTGCATTTTCTGCATTA 478
Query 476 GCT 478
|||
Sbjct 479 GCT 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23308644208
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5