BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358009
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57950.1 | Symbols: | 26S proteasome regulatory subunit, pu... 1236 0.0
> AT5G57950.1 | Symbols: | 26S proteasome regulatory subunit,
putative | chr5:23460709-23462388 FORWARD LENGTH=1000
Length=1000
Score = 1236 bits (669), Expect = 0.0
Identities = 810/873 (93%), Gaps = 30/873 (3%)
Strand=Plus/Plus
Query 102 GAGAGGAGAAGAGAAGATGGTTGGCGCGAATCTGAAAGCGGAGACGATGACTCTAATGGA 161
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 41 GAGAAGAGAAGAGAAGATGGTTGGCGCGAATCTGAAAGCGGAGACGATGGCTCTAATGGA 100
Query 162 CAAGAGAGCAGCCATGGAGACGGAGATGAACTCTATTGTCGAACGTCTCTGCAATCCCGG 221
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 CAAGAGAACAGCCATGGAGACGGAGATGAACTCTATTGTCGAACGTCTCTGCAATCCCGG 160
Query 222 CGGTCCTGGTCTCTCCGGCAATCTTATCGACTCGGAGGGATTTCCTCGGGAAGATATTGA 281
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 161 TGGTCCTGGTCTCTCCGGCAATCTCATCGACTCGGAGGGATTTCCTCGGGAAGATATTGA 220
Query 282 CATTCCGGTGGTGAGAGCTGAGCGGCGTCGTCTTGCTGAGTTAAGGAATGAGCATGGGGA 341
|||||| |||||||| ||||||| |||||||||||||||||||||| |||||| |||||
Sbjct 221 CATTCCCATGGTGAGAACTGAGCGCCGTCGTCTTGCTGAGTTAAGGAGTGAGCACGGGGA 280
Query 342 GATAACGGAAAAGATCAATGTGAACATTCAAATTCTTCATTCAGCGAGGCCTACATCTAG 401
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 281 GATAACGGAAAAGATAAATGTGAACATTCAAATTCTTCATTCAGTGAGGCCTACATCTAG 340
Query 402 AGCTTCATCCACAAAAGATTCAGGAAATGATGCAGGTCCAGAAGAAACTAGCTTGTCA-G 460
|||||||||||| || | | | || | |||||||||||||||| ||||||||| |
Sbjct 341 AGCTTCATCCAC--AA-A---A-G--AT--T-CAGGTCCAGAAGAAACAAGCTTGTCAGG 388
Query 461 -G-TGCAGTGAATTCTTTATCTGCCTCCATTG-AGACATCTGGCCTCAGTGTTACCTCCG 517
| |||||| ||||||||||||||||||| || ||||||||||| |||||||||| ||||
Sbjct 389 TGCTGCAGTAAATTCTTTATCTGCCTCCA-TGCAGACATCTGGCTTCAGTGTTACTTCCG 447
Query 518 GTGCCATGGATGTGGATGTGGTTACTAGTATTCCCTTTGCCATGGTTGATGAGATAAACG 577
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 448 GTCCCATGGATGTGGATGTGGTTACTAGTATTCCCTTTGCAATGGTTGATGAGATAAACG 507
Query 578 AGTCATCTCCAGCAGCAGAGGATGGATTACAGCTTGGAGATCAGGTTGTGAAATTTGGCA 637
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 508 AGTCATCTCCAGCAGCAGAGGGTGGATTACAGCTTGGAGATCAGGTTTTGAAATTTGGCA 567
Query 638 TCGTGGATGGTGGTGACAACCTGTTGCAAAGGCTTGCCACTGAAGCTCAGTCTAACCAGG 697
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 568 ACGTGGAGGGTGGTGACAACCTGTTGCAAAGGCTTGCCGCTGAAGCTCAGTCTAACCAGG 627
Query 698 GACAAGCAGTTTCTGTTCAAGTTATGAGGCAAGGTTCAAAAGTCGTCTTATCTGTCACAC 757
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 628 GACAAGCCGTTTCTGTTCAAGTTATGAGGCAAGGTGCAAAAGTCGTCTTATCTGTCACAC 687
Query 758 CAAGGATATGGCAAGGCAGAGGT-----G-----CCATTTCCGTTTGGTATGAGCAGCAG 807
||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 688 CAAGGATATGGCAAGGCAGAGGTCTATTGGGGTGCCATTTCCGTTTGGTATGAGCAGCAG 747
Query 808 ATGCTTCCTTGGATTATCATCTGGGGGTCTGGATATGGTGAAAGCTTCTGCGAAAGCTAG 867
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 748 ATACTTCCTTGGATTATCATCTGGGGGTCTGGATATGGTGAAAGCTTCTGTGAAAGCTAG 807
Query 868 TGGGTGATGAAGTCAATT-T-GCAAAGTAGAGAACAGA-TTTTTCATCTTTTGTATGGAG 924
| |||||||||||| ||| | |||||||||||||||| ||||||| |||||||||||||
Sbjct 808 TCGGTGATGAAGTCTATTATTGCAAAGTAGAGAACAGTGTTTTTCAACTTTTGTATGGAG 867
Query 925 AAACCAACTAAACAAATAGCATTTGTTCTGTAG 957
|| ||||||||||||||||||||||||||||||
Sbjct 868 AACCCAACTAAACAAATAGCATTTGTTCTGTAG 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46818225004
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5