BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358051
Length=651
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulato... 765 0.0
> AT5G58340.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr5:23582495-23584412 FORWARD LENGTH=1626
Length=1626
Score = 765 bits (414), Expect = 0.0
Identities = 508/553 (92%), Gaps = 7/553 (1%)
Strand=Plus/Plus
Query 32 ACGAGTCGCGTGGTGAAAGGGAGGACGTTAATGGGATTGATAGAGAGAACGCTACTGATG 91
||||| ||||||||||||||||||||| |||||||||| |||||| ||||||| |||||
Sbjct 810 ACGAGGCGCGTGGTGAAAGGGAGGACGGGAATGGGATTGGTAGAGACAACGCTAATGATG 869
Query 92 GTGATGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGAGGAGG 151
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 870 GTGAAGGAATGGAATGTCTGGAGAATGATGGGATTGATAATGTGAATGCAGCAGACGAGG 929
Query 152 AGCACACAATGAGTGCACAAGAACAGGAACATGAGCAAAGTCTTGATAAGGGAGACAAAA 211
|||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| |||
Sbjct 930 AGCACACAGTGAGTGCACAAGATCAGGAACATGAGCCAAGTCTTGATAAGGGAGACGAAA 989
Query 212 TGGTTGCTCGAGAGCTGGAGGATTATTT-GTTAGAGATTCAAAGACACATCGACCCTTCC 270
||| ||||||||||||| |||| ||||| || |||||||||| |||||||||||||||||
Sbjct 990 TGGCTGCTCGAGAGCTGAAGGAATATTTAGT-AGAGATTCAAGGACACATCGACCCTTCC 1048
Query 271 ATTAGGCGAGGGGAAGAACCTAACACTGCAATTAATCACTCAGTAGATGTCACTCCTCAG 330
| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
Sbjct 1049 ACTAGGCAAGGGGAAGAACCTAACAGTGCAATTGATCACTCAGTAGATGTCACTCCTCCG 1108
Query 331 CCTACTCGGGTGAATAGGACTGGAACACGCGGTCAAGACCATAATGAAGCAACAGATAAT 390
||||||||||||||||||||||||||| || ||||||||||||| |||||| | ||||||
Sbjct 1109 CCTACTCGGGTGAATAGGACTGGAACAGGCTGTCAAGACCATAACGAAGCATCGGATAAT 1168
Query 391 GTAAATGAGAAAGGTTCTGATAGTCAGAGAA-CGTGGTCTGGCAGAGTTCGGCCTCGTCT 449
||||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||||
Sbjct 1169 GTAAATGAGAAAGGTTCGGATAGTCAG-GAAACATGGTCTAGCAGAGTTCGGCCTCGTCG 1227
Query 450 ACCAACCCCTGTAACTCTGAATGTATCTCCATTGAAGAA-GGACGGATTGGCAAAACCCC 508
|||||||||||||||||||| |||||||||||| ||||| || ||||||||| ||||| |
Sbjct 1228 ACCAACCCCTGTAACTCTGAGTGTATCTCCATTAAAGAAAGG-CGGATTGGCGAAACCAC 1286
Query 509 ATGTCAGAAGGCCAAAGAAATTCTGGACGCCTGAAGAAGTGGAAGCTCTGAGGGAAGGAG 568
||||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1287 ATGTCAGGAGACCAAAGAAATTCTGGAAGCCAGAAGAAGTGGAAGCTCTGAGGGAAGGAG 1346
Query 569 TAAAAAGAGTATG 581
||||| |||||||
Sbjct 1347 TAAAA-GAGTATG 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31446576022
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5