BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358079
Length=3144
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58610.1 | Symbols: | PHD finger transcription factor, puta... 3526 0.0
> AT5G58610.1 | Symbols: | PHD finger transcription factor, putative
| chr5:23686771-23691053 REVERSE LENGTH=3198
Length=3198
Score = 3526 bits (1909), Expect = 0.0
Identities = 2192/2329 (94%), Gaps = 18/2329 (1%)
Strand=Plus/Plus
Query 102 AAGGAGTCTTGAGGAAGGGTTTCTGGGTTCTTGGTATTTAGGAACTGTTACTTCAGCGAG 161
|||||||||||| || |||| ||||||||||||||||||||||||||| |||||||| |
Sbjct 75 AAGGAGTCTTGAAGAGGGGTCTCTGGGTTCTTGGTATTTAGGAACTGTAACTTCAGCTAA 134
Query 162 AAAGCGACGTCGGCGTTCTATCAGATATGATAACATTCTGTCTGATGATGGTACTGATTC 221
||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||| |
Sbjct 135 AAAGCGACGTCGGCGTTGTATCAGATATGACAACATTCTCTCTGATGATGGTTCTGGTAA 194
Query 222 CCTTGTGGAAACTGTTGATGTTTCGGATGTAGTAGAAGGGTTGGATGATTGCACTGATGT 281
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 195 TCTTGTGGAAACTGTTGATGTTTCTGATATAGTAGAAGGGTTGGATGATTGCACTGATGT 254
Query 282 TTCTGATACTTTCCGTGGACGTTTAAGACCTGTGCCGCCAACGCTGCAAT-TTGGT-AAG 339
||||||||||||||||||||||||||||||||||||||||| |||| || ||| | ||
Sbjct 255 TTCTGATACTTTCCGTGGACGTTTAAGACCTGTGCCGCCAAAGCTG-GATGTTGCTAAAC 313
Query 340 TCGAACCTTGCGTATGGGCTTTGCGTCGATGTGTTTTTCAGTGAAGCTTGGTGGGAAGGT 399
| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 314 T-GAACCTTGCGTATGGGCTCTGCGTCGATGTGTTTTTCAGTGATGCTTGGTGGGAAGGT 372
Query 400 GTGCTCTTTGACCACGAAAATGGTTCTGAGAAAAGGCGGGTGTTTTTCCCTGATTTGGGT 459
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 373 GTGCTCTTTGACCACGAGAATGGTTCTGAGAAAAGGAGGGTGTTTTTCCCTGATTTGGGT 432
Query 460 GATGAATTGGATGCTGATCTTCAATCTTTACGTATTACTCAGGATTGGAATGAGGCTGCA 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 433 GATGAATTGGATGCTGATCTTCAATCTTTACGTATTACTCAGGATTGGAATGAGGCTACA 492
Query 520 GAGACGTGGGAGTGTCGTGGGAGATGGTTGTTTCTTGATTTAATTGAGAAATATAAGGAA 579
|||||||||||||||||||| || ||||||||||||||||| ||||||| ||||||||||
Sbjct 493 GAGACGTGGGAGTGTCGTGGCAGTTGGTTGTTTCTTGATTTGATTGAGATATATAAGGAA 552
Query 580 GATAACTATCTCCCGGTTTCGGTAAGGCAACTTTGGTATGACATACGGGACAGGATTGGT 639
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 553 TATAACTATCTCCCGGTTTCGGTAAAGCAACTTTGGTATGACATACGAGACAGGATTGGT 612
Query 640 TTTGTAAGAATCCAAGAATGGACTTGCTCTACTAGGCATTTATGGGAAGATTTGATGCTA 699
||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 613 TTTGTAAGAATTCAAGAATGGACTTGCTCTACTAAGCATTTATGGCAAGATTTGATGCTG 672
Query 700 GAGGTGATTGAAGATAATCTTAGAATCACCATTGACCAGTTTCTTCATGATTATGACGCT 759
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 673 GGGGTGATTGAAGATAATCTTAAAATCACCATTGACCAGTTTCTTCATGATTTTGACGCT 732
Query 760 GAAATATACCCTCAGTTGAAGCTCTTAAATGAAGCTTCTAAGGCGGTTTATGAGACCAAT 819
|||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 733 GAAAGATACCCTCAATTGAAGCTCTTAAATGAAGCTTCTCAGGCGGTTTATGAGACCAAT 792
Query 820 GCTTGTCTCAGCAGTGTGCTAGCGATTGCTCCACAAGAACAACAATTTTCCTGCATTGAC 879
|||||||| ||| || ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 793 GCTTGTCTTAGCGGTATGCTAACGATTGCTCCACAAGAACACCAATTTTCCTGCATTGAC 852
Query 880 AAAGATTAT-AAACCGGCAAGCCAGAGATGCCAGTCCTTGTCTGTCTTGACTTCTGCTTC 938
||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 853 AAAGATT-TCAAACCGGCAAGCCAGAGATGCCAGTCCTTGTCTGTCTTGACTTCTGTTTC 911
Query 939 TGGCATAAGGTCAGATGCGAGTTACATCAATAAGGCAACAGAAACTTCCAGCAAAAAATC 998
||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||
Sbjct 912 TGGCATAAGGTCAGAGGCGAGTGACATCAATAAGGCAACAGAAATTTCCAGCAAGAAATC 971
Query 999 TACTGCCGCTCATAAAAA-GATGATACTACACAAGAAACCTGGAATCTGGCATCCTTTCG 1057
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 972 TACTGCCGCTCATAAAAAGGAT-ATACTACACAAGAAACCTGGAATCTGGCATCCTTTCG 1030
Query 1058 ATTGTCTTGCTAAATCAGGCCCACAAGCTGTGTCGAGCTTTATCAGGTCACCGTTACCGC 1117
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1031 ACTGTCTTGCTAAATCAGGCCCACAAGCTGTGTCGAGCTTTATCAGGTCACCGTTACTGC 1090
Query 1118 CAATGGCCATGCGTGTCAGGATGCATCTTAAGTATATGGGATGGACCATAGAACATATGG 1177
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CCATGGCCATGCATGTCAGGATGCATCTTAAGTATATGGGATGGACCATAGAACATATGG 1150
Query 1178 TAGACGAAGCTGGAAGGCAAAGGTTTCGCTACCTCTCACCAAATGGAAGACTAACAGAGC 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1151 TAGACGAAGCTGGAAGGCAAAGGTTTCGCTACCTCTCACCAAATGGAAGACTAAAAGAGC 1210
Query 1238 ATTCTCTTCGTCAAGTATGTTTCAGATTGAAACAACGTGATGAATCCCTGACTACTCCGG 1297
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct 1211 ATTCTCTTCGTCAAGTATGTTTCAGACTGAAACAACCTGATAAATCCCTGACTACTCCGG 1270
Query 1298 GGATGGCTAACCCTCCTTCTCTGTCTTGTGAAAACCAGACGTATAACACCCAGGAAATAA 1357
|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
Sbjct 1271 GGATGGCTAACCCTCCTTCTCTGTCTAGTGAAAACCAGACGTATAGCACCCAGGAAATGA 1330
Query 1358 GGTGTATTGTTTTGGCATTGCCTGCCTGTAATAGAAGTGTCGCTCTTGGTGAAGGAATGA 1417
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1331 GGTCTATTGTTTTGGCATTGCCTGCCTTTAATAGAAGTGTCGCTCTTGGTGAAGGATTGA 1390
Query 1418 AGCCGTCTACTGATACCTTGCTTGAGTATGAAACTCAAGGAAACGAGGAGGTCTTCACGA 1477
||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1391 AGCTGTCTACTGATACCTTGCTTGAGTATGAAACGCAAGGAAACGAGGAGGTCTTTACGA 1450
Query 1478 GGGAAAGCCGCAATTTCTGTCCCAGAAATGCCTTCCCGGGTCAGAAAAAGACACTCCGTG 1537
| |||||||||||||| ||||||| ||| ||||| |||||||||||| ||||||||||||
Sbjct 1451 GAGAAAGCCGCAATTTTTGTCCCAAAAAAGCCTTTCCGGGTCAGAAAGAGACACTCCGTG 1510
Query 1538 TTAGGCTCGAGCCAAAAACAAAAGCTCAAGGCATCATCCTAAGGTTGAAAAGTAAGCGTA 1597
| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1511 TCAGGATCGAGCCAAAAACAAAAGCTCAAGGCATCATCCTAAGGTTAAAAAGTAAGCGTA 1570
Query 1598 AACAGAAACCTAAGAAGGACGAAGTGATTGTAGGTTTGCAGAATGTCAATCTGAGCATGA 1657
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1571 AACAGACACCTAAGAAGGACGAAGTGATTGTAGGTTTACAGAATGTCAATCGGAGCATGA 1630
Query 1658 GAAGGGGGCACACTTCAAGAAGGTTAATGGATATCAAGAATCGAGTAACTGGTCGTGGTA 1717
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 1631 GAAGGGGGCACACTTCAAAAAAGTTAATGGATATCAAGAATCGAGTAACTAGTCGTGGTA 1690
Query 1718 AAACCCGTGTGTTACGATCAAGCAAAAGAGTGCAACGGGTAATAACTCCCATCTCAAGAC 1777
|||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||
Sbjct 1691 AAACCCGTGTGTTACGATCAAGAAAAAGAGCGCAACGAGTAATAACTCCCATCTCAAGAA 1750
Query 1778 ATCACAGTCCACGTAGTATTCTTTCCTGGCTTATTGACAACAATGTGATTCTACCAAGGG 1837
| ||||||||||| | ||||||||||||||| || |||||||||||| ||||||||||||
Sbjct 1751 AGCACAGTCCACGAAATATTCTTTCCTGGCTCATGGACAACAATGTGGTTCTACCAAGGG 1810
Query 1838 AAAATATACGATACCGTAACCAAAAGGATGACA-CTGTGATAAAAGAGGGGAAACTAACC 1896
|||||||||||| | |||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 1811 AAAATATACGATGCTGTAACCAAAAGGAT-ACAACTGTGAGAAAAGAGGGGAAACTAACC 1869
Query 1897 CGTGAGGGTATAAAATGCAGTTGTTGCCGTAGAATTTTCACCATAAGTGGCTTTGAAGTT 1956
|||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1870 CGTGAGGGAATAAAATGCAGTTGTTGCCGTAGAGTTTTCACCATAAATGGCTTTGAAGTT 1929
Query 1957 CATGCTAATGGTGGATCCTGCAGAGCAGCAGCCAATATCTTTC-TGGATGATGGAAGATC 2015
||||||||||||| ||||||||| | |||||||||||| |||| ||||||||||||||||
Sbjct 1930 CATGCTAATGGTGCATCCTGCAGCGGAGCAGCCAATAT-TTTCCTGGATGATGGAAGATC 1988
Query 2016 TCTTTTGGAATGCCAAGTAGAAGCCTATGAAACAAGAAAGAAAGCACAACCACCTGATAT 2075
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1989 TCTTTTGGAATGCCAAGTAGAAGCCTATAAAAAAAGAAAGAAAGCACAACCACCTGATAT 2048
Query 2076 -TCTGAAGATGAAATTGCGTCAAGGGGAGAACGATGTAATTTGCTCCGTTTGTCACTATG 2134
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2049 GT-TGAAGATGAAATTGCGTCAAGGGGAGAACGATGTATTTTGCTCCGTTTGTCACTATG 2107
Query 2135 GCGGCAAACTGATTCTCTGTGATGGATGTCCATCTGCCTTCCATGCAAATTGTCTCGGGC 2194
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2108 GTGGCAAACTGATTCTCTGTGATGGATGTCCATCCGCCTTCCATGCAAATTGTCTTGGGC 2167
Query 2195 TGGAGGATGTTCCAGATGGTGACTGGTTCTGCAAGTCATGTTGTTGTGGTGCATGTGGAC 2254
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 2168 TGGAGGATGTTCCAGATGGTGATTGGTTCTGCCAGTCATGTTGTTGTGGTGCATGTGGAC 2227
Query 2255 AATTCTTTCTCAAGGCTACTAGCA-AATATGCCAAGGAGGAAAAGTTTATCAGTTGCAAG 2313
|||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2228 AATTCTTTCTAAAGACTACTAGCACAA-ATGCCAAGGAGGAAAAGTTTATCAGTTGCAAG 2286
Query 2314 CAATGCGAACTTAAATATCACCTTAGTTGTCT-GCGCTATGATGGTGCCGGTGATTCATT 2372
|||||||||||||| ||||||| |||||| || ||| |||||||||||| ||||||||||
Sbjct 2287 CAATGCGAACTTAAGTATCACCCTAGTTG-CTTGCGTTATGATGGTGCCTGTGATTCATT 2345
Query 2373 GGATACATTCTTGGGAGAAAAGTGGTTTTGCAGCAAGGACTGTGAAGAG 2421
||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 GGATAAAATCTTGGGAGAAAAGTGGTTTTGCAGCAAGGACTGTGAAGAG 2394
Score = 1007 bits (545), Expect = 0.0
Identities = 611/643 (95%), Gaps = 4/643 (1%)
Strand=Plus/Plus
Query 2498 AGTCCTTTGAACCAAATATGTATGGGGATGACGCTTATAAAATCGAGGATGTGGCAGAAA 2557
||||||| ||||||||||||||||| |||||||||| |||||| |||| || ||||||||
Sbjct 2393 AGTCCTTGGAACCAAATATGTATGGAGATGACGCTTCTAAAATTGAGGCTGCGGCAGAAA 2452
Query 2558 ATCACTGCAAACTCAGTGTTGCCCTTGATGTGATGCATGAACTTTTCGAGCCTGTAAAAA 2617
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2453 ATCACTGCATACTCAGTGTTGCCCTTGATGTGATGCATGAACTTTTCGAGCCTGTAAAAA 2512
Query 2618 GACCTCATGGTGGAAGAGATCTTGCTGAAGATGTTATTTTTAGCAGATGGTCAAAATTCA 2677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 GACCTCATGGTGGAAGAGATCTTGCTGAAGATGTTATTTTTAGCAGATGGTCAAAATTCA 2572
Query 2678 AACGTTTGAATTTCAGTGGATTTTACACAGTACTTCTAGAAAGGAACGAA-GAACTGGTT 2736
|||||||||| ||||||||||||||||| |||||||||||||||||| || |||||||||
Sbjct 2573 AACGTTTGAACTTCAGTGGATTTTACACGGTACTTCTAGAAAGGAAC-AACGAACTGGTT 2631
Query 2737 ACTGTGGCTACTGTCAGAATTTTGGGGAAAAAGGTTGCAGAAATGCCCTTTATCGGTACT 2796
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2632 TCTGTGGCTACTGTTAGAATTTTGGGGAAAAAGGTTGCAGAAATGCCCTTTATTGGTACT 2691
Query 2797 AGATTCCAGCATCGCCAGCGTGGGATGTGCCGGGTTTTGATTAATGAACTCGAAAAGGTG 2856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2692 AGATTCCAGCATCGCCAGCGTGGGATGTGCCGGGTTTTGATTAATGAACTCGAAAAGGTG 2751
Query 2857 CTCATTGACTTGGGAGTTGAGAGGCTGGTCCTGCCTGCAGTTCCATGCGTGCTGAACACA 2916
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 2752 CTCATTGACTTGGGAGTAGAGAGGTTGGTCCTGCCTGCAGTTCCATGCGTGCTGAACACA 2811
Query 2917 TGGATCAACTCATTTGGATTTACAAAGATGACAATCTCCGAAAGAAAAGAA-TTTCTTAA 2975
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 2812 TGGATCAACTCATTTGGATTTACAAAGATGACAATCTCCGAAAGAAAA-AACTTTCTGAA 2870
Query 2976 ATTTACCTTGTTGGAATTCGGACGAACAATATTGTGCCAGAAGATCTTAATCAAGAGCAG 3035
||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| |
Sbjct 2871 ATTTACCTTGTTGGAGTTCGGACGAACAATATTGTGCGAGAAGATCTTGATCAAGAGCGG 2930
Query 3036 CGTGGCAGATCCAATTCCAAGTACAGTGTCTCAAGGTGAAAAACACTGTGACATACTCAG 3095
||| ||||||||||||||||||| || |||| ||||||| |||| |||||||| |||||
Sbjct 2931 CGTAGCAGATCCAATTCCAAGTATAGCATCTCTAGGTGAACAACAGTGTGACATCCTCAG 2990
Query 3096 GATTGAAGACAATTCTGCTTCTGATGATAGATCAGAAGTACAT 3138
|||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2991 GATTGAAGACAATTCTGCTTCTGATGATGGATCAGAAGTACAT 3033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 156370361331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5