BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg358079 Length=3144 Score E Sequences producing significant alignments: (Bits) Value AT5G58610.1 | Symbols: | PHD finger transcription factor, puta... 3526 0.0 > AT5G58610.1 | Symbols: | PHD finger transcription factor, putative | chr5:23686771-23691053 REVERSE LENGTH=3198 Length=3198 Score = 3526 bits (1909), Expect = 0.0 Identities = 2192/2329 (94%), Gaps = 18/2329 (1%) Strand=Plus/Plus Query 102 AAGGAGTCTTGAGGAAGGGTTTCTGGGTTCTTGGTATTTAGGAACTGTTACTTCAGCGAG 161 |||||||||||| || |||| ||||||||||||||||||||||||||| |||||||| | Sbjct 75 AAGGAGTCTTGAAGAGGGGTCTCTGGGTTCTTGGTATTTAGGAACTGTAACTTCAGCTAA 134 Query 162 AAAGCGACGTCGGCGTTCTATCAGATATGATAACATTCTGTCTGATGATGGTACTGATTC 221 ||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||| | Sbjct 135 AAAGCGACGTCGGCGTTGTATCAGATATGACAACATTCTCTCTGATGATGGTTCTGGTAA 194 Query 222 CCTTGTGGAAACTGTTGATGTTTCGGATGTAGTAGAAGGGTTGGATGATTGCACTGATGT 281 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 195 TCTTGTGGAAACTGTTGATGTTTCTGATATAGTAGAAGGGTTGGATGATTGCACTGATGT 254 Query 282 TTCTGATACTTTCCGTGGACGTTTAAGACCTGTGCCGCCAACGCTGCAAT-TTGGT-AAG 339 ||||||||||||||||||||||||||||||||||||||||| |||| || ||| | || Sbjct 255 TTCTGATACTTTCCGTGGACGTTTAAGACCTGTGCCGCCAAAGCTG-GATGTTGCTAAAC 313 Query 340 TCGAACCTTGCGTATGGGCTTTGCGTCGATGTGTTTTTCAGTGAAGCTTGGTGGGAAGGT 399 | |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 314 T-GAACCTTGCGTATGGGCTCTGCGTCGATGTGTTTTTCAGTGATGCTTGGTGGGAAGGT 372 Query 400 GTGCTCTTTGACCACGAAAATGGTTCTGAGAAAAGGCGGGTGTTTTTCCCTGATTTGGGT 459 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 373 GTGCTCTTTGACCACGAGAATGGTTCTGAGAAAAGGAGGGTGTTTTTCCCTGATTTGGGT 432 Query 460 GATGAATTGGATGCTGATCTTCAATCTTTACGTATTACTCAGGATTGGAATGAGGCTGCA 519 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 433 GATGAATTGGATGCTGATCTTCAATCTTTACGTATTACTCAGGATTGGAATGAGGCTACA 492 Query 520 GAGACGTGGGAGTGTCGTGGGAGATGGTTGTTTCTTGATTTAATTGAGAAATATAAGGAA 579 |||||||||||||||||||| || ||||||||||||||||| ||||||| |||||||||| Sbjct 493 GAGACGTGGGAGTGTCGTGGCAGTTGGTTGTTTCTTGATTTGATTGAGATATATAAGGAA 552 Query 580 GATAACTATCTCCCGGTTTCGGTAAGGCAACTTTGGTATGACATACGGGACAGGATTGGT 639 |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 553 TATAACTATCTCCCGGTTTCGGTAAAGCAACTTTGGTATGACATACGAGACAGGATTGGT 612 Query 640 TTTGTAAGAATCCAAGAATGGACTTGCTCTACTAGGCATTTATGGGAAGATTTGATGCTA 699 ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 613 TTTGTAAGAATTCAAGAATGGACTTGCTCTACTAAGCATTTATGGCAAGATTTGATGCTG 672 Query 700 GAGGTGATTGAAGATAATCTTAGAATCACCATTGACCAGTTTCTTCATGATTATGACGCT 759 | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 673 GGGGTGATTGAAGATAATCTTAAAATCACCATTGACCAGTTTCTTCATGATTTTGACGCT 732 Query 760 GAAATATACCCTCAGTTGAAGCTCTTAAATGAAGCTTCTAAGGCGGTTTATGAGACCAAT 819 |||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 733 GAAAGATACCCTCAATTGAAGCTCTTAAATGAAGCTTCTCAGGCGGTTTATGAGACCAAT 792 Query 820 GCTTGTCTCAGCAGTGTGCTAGCGATTGCTCCACAAGAACAACAATTTTCCTGCATTGAC 879 |||||||| ||| || ||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 793 GCTTGTCTTAGCGGTATGCTAACGATTGCTCCACAAGAACACCAATTTTCCTGCATTGAC 852 Query 880 AAAGATTAT-AAACCGGCAAGCCAGAGATGCCAGTCCTTGTCTGTCTTGACTTCTGCTTC 938 ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 853 AAAGATT-TCAAACCGGCAAGCCAGAGATGCCAGTCCTTGTCTGTCTTGACTTCTGTTTC 911 Query 939 TGGCATAAGGTCAGATGCGAGTTACATCAATAAGGCAACAGAAACTTCCAGCAAAAAATC 998 ||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| ||||| Sbjct 912 TGGCATAAGGTCAGAGGCGAGTGACATCAATAAGGCAACAGAAATTTCCAGCAAGAAATC 971 Query 999 TACTGCCGCTCATAAAAA-GATGATACTACACAAGAAACCTGGAATCTGGCATCCTTTCG 1057 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 972 TACTGCCGCTCATAAAAAGGAT-ATACTACACAAGAAACCTGGAATCTGGCATCCTTTCG 1030 Query 1058 ATTGTCTTGCTAAATCAGGCCCACAAGCTGTGTCGAGCTTTATCAGGTCACCGTTACCGC 1117 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1031 ACTGTCTTGCTAAATCAGGCCCACAAGCTGTGTCGAGCTTTATCAGGTCACCGTTACTGC 1090 Query 1118 CAATGGCCATGCGTGTCAGGATGCATCTTAAGTATATGGGATGGACCATAGAACATATGG 1177 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1091 CCATGGCCATGCATGTCAGGATGCATCTTAAGTATATGGGATGGACCATAGAACATATGG 1150 Query 1178 TAGACGAAGCTGGAAGGCAAAGGTTTCGCTACCTCTCACCAAATGGAAGACTAACAGAGC 1237 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1151 TAGACGAAGCTGGAAGGCAAAGGTTTCGCTACCTCTCACCAAATGGAAGACTAAAAGAGC 1210 Query 1238 ATTCTCTTCGTCAAGTATGTTTCAGATTGAAACAACGTGATGAATCCCTGACTACTCCGG 1297 |||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||| Sbjct 1211 ATTCTCTTCGTCAAGTATGTTTCAGACTGAAACAACCTGATAAATCCCTGACTACTCCGG 1270 Query 1298 GGATGGCTAACCCTCCTTCTCTGTCTTGTGAAAACCAGACGTATAACACCCAGGAAATAA 1357 |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | Sbjct 1271 GGATGGCTAACCCTCCTTCTCTGTCTAGTGAAAACCAGACGTATAGCACCCAGGAAATGA 1330 Query 1358 GGTGTATTGTTTTGGCATTGCCTGCCTGTAATAGAAGTGTCGCTCTTGGTGAAGGAATGA 1417 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1331 GGTCTATTGTTTTGGCATTGCCTGCCTTTAATAGAAGTGTCGCTCTTGGTGAAGGATTGA 1390 Query 1418 AGCCGTCTACTGATACCTTGCTTGAGTATGAAACTCAAGGAAACGAGGAGGTCTTCACGA 1477 ||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1391 AGCTGTCTACTGATACCTTGCTTGAGTATGAAACGCAAGGAAACGAGGAGGTCTTTACGA 1450 Query 1478 GGGAAAGCCGCAATTTCTGTCCCAGAAATGCCTTCCCGGGTCAGAAAAAGACACTCCGTG 1537 | |||||||||||||| ||||||| ||| ||||| |||||||||||| |||||||||||| Sbjct 1451 GAGAAAGCCGCAATTTTTGTCCCAAAAAAGCCTTTCCGGGTCAGAAAGAGACACTCCGTG 1510 Query 1538 TTAGGCTCGAGCCAAAAACAAAAGCTCAAGGCATCATCCTAAGGTTGAAAAGTAAGCGTA 1597 | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1511 TCAGGATCGAGCCAAAAACAAAAGCTCAAGGCATCATCCTAAGGTTAAAAAGTAAGCGTA 1570 Query 1598 AACAGAAACCTAAGAAGGACGAAGTGATTGTAGGTTTGCAGAATGTCAATCTGAGCATGA 1657 |||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1571 AACAGACACCTAAGAAGGACGAAGTGATTGTAGGTTTACAGAATGTCAATCGGAGCATGA 1630 Query 1658 GAAGGGGGCACACTTCAAGAAGGTTAATGGATATCAAGAATCGAGTAACTGGTCGTGGTA 1717 |||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| Sbjct 1631 GAAGGGGGCACACTTCAAAAAAGTTAATGGATATCAAGAATCGAGTAACTAGTCGTGGTA 1690 Query 1718 AAACCCGTGTGTTACGATCAAGCAAAAGAGTGCAACGGGTAATAACTCCCATCTCAAGAC 1777 |||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||| Sbjct 1691 AAACCCGTGTGTTACGATCAAGAAAAAGAGCGCAACGAGTAATAACTCCCATCTCAAGAA 1750 Query 1778 ATCACAGTCCACGTAGTATTCTTTCCTGGCTTATTGACAACAATGTGATTCTACCAAGGG 1837 | ||||||||||| | ||||||||||||||| || |||||||||||| |||||||||||| Sbjct 1751 AGCACAGTCCACGAAATATTCTTTCCTGGCTCATGGACAACAATGTGGTTCTACCAAGGG 1810 Query 1838 AAAATATACGATACCGTAACCAAAAGGATGACA-CTGTGATAAAAGAGGGGAAACTAACC 1896 |||||||||||| | |||||||||||||| ||| |||||| ||||||||||||||||||| Sbjct 1811 AAAATATACGATGCTGTAACCAAAAGGAT-ACAACTGTGAGAAAAGAGGGGAAACTAACC 1869 Query 1897 CGTGAGGGTATAAAATGCAGTTGTTGCCGTAGAATTTTCACCATAAGTGGCTTTGAAGTT 1956 |||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 1870 CGTGAGGGAATAAAATGCAGTTGTTGCCGTAGAGTTTTCACCATAAATGGCTTTGAAGTT 1929 Query 1957 CATGCTAATGGTGGATCCTGCAGAGCAGCAGCCAATATCTTTC-TGGATGATGGAAGATC 2015 ||||||||||||| ||||||||| | |||||||||||| |||| |||||||||||||||| Sbjct 1930 CATGCTAATGGTGCATCCTGCAGCGGAGCAGCCAATAT-TTTCCTGGATGATGGAAGATC 1988 Query 2016 TCTTTTGGAATGCCAAGTAGAAGCCTATGAAACAAGAAAGAAAGCACAACCACCTGATAT 2075 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 1989 TCTTTTGGAATGCCAAGTAGAAGCCTATAAAAAAAGAAAGAAAGCACAACCACCTGATAT 2048 Query 2076 -TCTGAAGATGAAATTGCGTCAAGGGGAGAACGATGTAATTTGCTCCGTTTGTCACTATG 2134 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2049 GT-TGAAGATGAAATTGCGTCAAGGGGAGAACGATGTATTTTGCTCCGTTTGTCACTATG 2107 Query 2135 GCGGCAAACTGATTCTCTGTGATGGATGTCCATCTGCCTTCCATGCAAATTGTCTCGGGC 2194 | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 2108 GTGGCAAACTGATTCTCTGTGATGGATGTCCATCCGCCTTCCATGCAAATTGTCTTGGGC 2167 Query 2195 TGGAGGATGTTCCAGATGGTGACTGGTTCTGCAAGTCATGTTGTTGTGGTGCATGTGGAC 2254 |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 2168 TGGAGGATGTTCCAGATGGTGATTGGTTCTGCCAGTCATGTTGTTGTGGTGCATGTGGAC 2227 Query 2255 AATTCTTTCTCAAGGCTACTAGCA-AATATGCCAAGGAGGAAAAGTTTATCAGTTGCAAG 2313 |||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||||| Sbjct 2228 AATTCTTTCTAAAGACTACTAGCACAA-ATGCCAAGGAGGAAAAGTTTATCAGTTGCAAG 2286 Query 2314 CAATGCGAACTTAAATATCACCTTAGTTGTCT-GCGCTATGATGGTGCCGGTGATTCATT 2372 |||||||||||||| ||||||| |||||| || ||| |||||||||||| |||||||||| Sbjct 2287 CAATGCGAACTTAAGTATCACCCTAGTTG-CTTGCGTTATGATGGTGCCTGTGATTCATT 2345 Query 2373 GGATACATTCTTGGGAGAAAAGTGGTTTTGCAGCAAGGACTGTGAAGAG 2421 ||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 2346 GGATAAAATCTTGGGAGAAAAGTGGTTTTGCAGCAAGGACTGTGAAGAG 2394 Score = 1007 bits (545), Expect = 0.0 Identities = 611/643 (95%), Gaps = 4/643 (1%) Strand=Plus/Plus Query 2498 AGTCCTTTGAACCAAATATGTATGGGGATGACGCTTATAAAATCGAGGATGTGGCAGAAA 2557 ||||||| ||||||||||||||||| |||||||||| |||||| |||| || |||||||| Sbjct 2393 AGTCCTTGGAACCAAATATGTATGGAGATGACGCTTCTAAAATTGAGGCTGCGGCAGAAA 2452 Query 2558 ATCACTGCAAACTCAGTGTTGCCCTTGATGTGATGCATGAACTTTTCGAGCCTGTAAAAA 2617 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2453 ATCACTGCATACTCAGTGTTGCCCTTGATGTGATGCATGAACTTTTCGAGCCTGTAAAAA 2512 Query 2618 GACCTCATGGTGGAAGAGATCTTGCTGAAGATGTTATTTTTAGCAGATGGTCAAAATTCA 2677 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2513 GACCTCATGGTGGAAGAGATCTTGCTGAAGATGTTATTTTTAGCAGATGGTCAAAATTCA 2572 Query 2678 AACGTTTGAATTTCAGTGGATTTTACACAGTACTTCTAGAAAGGAACGAA-GAACTGGTT 2736 |||||||||| ||||||||||||||||| |||||||||||||||||| || ||||||||| Sbjct 2573 AACGTTTGAACTTCAGTGGATTTTACACGGTACTTCTAGAAAGGAAC-AACGAACTGGTT 2631 Query 2737 ACTGTGGCTACTGTCAGAATTTTGGGGAAAAAGGTTGCAGAAATGCCCTTTATCGGTACT 2796 ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2632 TCTGTGGCTACTGTTAGAATTTTGGGGAAAAAGGTTGCAGAAATGCCCTTTATTGGTACT 2691 Query 2797 AGATTCCAGCATCGCCAGCGTGGGATGTGCCGGGTTTTGATTAATGAACTCGAAAAGGTG 2856 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2692 AGATTCCAGCATCGCCAGCGTGGGATGTGCCGGGTTTTGATTAATGAACTCGAAAAGGTG 2751 Query 2857 CTCATTGACTTGGGAGTTGAGAGGCTGGTCCTGCCTGCAGTTCCATGCGTGCTGAACACA 2916 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 2752 CTCATTGACTTGGGAGTAGAGAGGTTGGTCCTGCCTGCAGTTCCATGCGTGCTGAACACA 2811 Query 2917 TGGATCAACTCATTTGGATTTACAAAGATGACAATCTCCGAAAGAAAAGAA-TTTCTTAA 2975 |||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || Sbjct 2812 TGGATCAACTCATTTGGATTTACAAAGATGACAATCTCCGAAAGAAAA-AACTTTCTGAA 2870 Query 2976 ATTTACCTTGTTGGAATTCGGACGAACAATATTGTGCCAGAAGATCTTAATCAAGAGCAG 3035 ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||| | Sbjct 2871 ATTTACCTTGTTGGAGTTCGGACGAACAATATTGTGCGAGAAGATCTTGATCAAGAGCGG 2930 Query 3036 CGTGGCAGATCCAATTCCAAGTACAGTGTCTCAAGGTGAAAAACACTGTGACATACTCAG 3095 ||| ||||||||||||||||||| || |||| ||||||| |||| |||||||| ||||| Sbjct 2931 CGTAGCAGATCCAATTCCAAGTATAGCATCTCTAGGTGAACAACAGTGTGACATCCTCAG 2990 Query 3096 GATTGAAGACAATTCTGCTTCTGATGATAGATCAGAAGTACAT 3138 |||||||||||||||||||||||||||| |||||||||||||| Sbjct 2991 GATTGAAGACAATTCTGCTTCTGATGATGGATCAGAAGTACAT 3033 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 156370361331 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5