BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358097
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58790.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 664 0.0
AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containin... 398 3e-110
> AT5G58790.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 7 growth stages; BEST Arabidopsis thaliana protein
match is: RNA recognition motif (RRM)-containing protein
(TAIR:AT3G47120.1); Has 4 Blast hits to 4 proteins in 2 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:23744877-23745981 FORWARD LENGTH=819
Length=819
Score = 664 bits (359), Expect = 0.0
Identities = 473/524 (90%), Gaps = 24/524 (5%)
Strand=Plus/Plus
Query 1 ATGAATCCGTTGACAATGGTGAAGAAGACACAGAGAATTAACGCGAAAGAATTAGATCTA 60
|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 113 ATGAATCCGTTGACAA-GGTGAAGAAGACGCAGAGCATTAACGCGAAAGAATTAGATCTA 171
Query 61 GGGATCTCCGACGAAGCATCTTGGCACGCTAAATACAAAGATTCAGCCTACGTTTACGTC 120
||||| | ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 172 GGGATTTACGACGAAGCATCTTGGCACGCCAAGTACAAAGATTCAGCCTACGTTTACGTC 231
Query 121 GGAGAATTAC-TGTACGATTTAACGGAGGGTGACCTCCTCGCCGTTTTCGCACAATATGG 179
|||||||||| | |||||| | ||||||||||||||||||||||||||| ||||||||||
Sbjct 232 GGAGAATTACCT-TACGATCTCACGGAGGGTGACCTCCTCGCCGTTTTCTCACAATATGG 290
Query 180 TGAAGTTGTTGATGTGAATCTTGCTCGAGATAAAGGAACTGGGAAATCAAAAGGATTTGC 239
||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||||||
Sbjct 291 TGAAGTTGTTGATTTGAATCTTGTTCGAGATAAAGGAACTGGGAGATCAAAAAGATTTGC 350
Query 240 GTTTGTTGCTTATGAAGATCAGAGAAGTACAAATCTTGCTGTTGATAATCTGAATGGAGC 299
|||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 351 GTTTGTTGCTTATGAAGATCAGAGAAGTACTAATCTTGCTGTTG-------G--TG---- 397
Query 300 TAAGGTTTTGGGAAGAATCATAAAAGTGGAGCATTGTGGTAAATACTCAaagagagaaga 359
| | |||||| || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 398 T----T---GGGAAGGATAATAAAAGTGGAGCATTGTGGTAAATACTTAAAGAGAGAAGA 450
Query 360 ggatgatgaagagacgaagcataagaagagagaagCTC-GTGGTGTTTGCAGAGCTTTTC 418
||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 451 GGAAGATGAAGAGACGAAGCAGAAGAAGAGAGAAGCTCCGTGGTGTTTGCAGAGCTTTTC 510
Query 419 AGAGAAAGGAATGTACTCGTGGAGATGGTTGCAAATTTTCTCACGATGAAAACAGAGGTG 478
|||||||||| ||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 511 AGAGAAAGGAGTGTACTCGTGGAGATTCTTGCAAATTTTCTCACGATGAAAATAGAGCTG 570
Query 479 CCAATACCGGCTGGGGTCACGAAGACCGTAGAAGTTCCAGGTGA 522
|||||||||| |||||||||||||| ||||||||||||| ||||
Sbjct 571 CCAATACCGGGTGGGGTCACGAAGATCGTAGAAGTTCCAAGTGA 614
> AT3G47120.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr3:17351141-17352822 REVERSE LENGTH=1305
Length=1305
Score = 398 bits (215), Expect = 3e-110
Identities = 430/532 (81%), Gaps = 22/532 (4%)
Strand=Plus/Plus
Query 1 ATGAATCCGTTGAC-AATGGTGAAGAAGAC-ACAG-AGAATTAACGCGAAAGAATTAGAT 57
|||||||| ||||| | ||||||||| | |||| || || ||||| | |||| ||||
Sbjct 54 ATGAATCCATTGACGCA-GGTGAAGAA-TCTACAGAAG-ATAAACGCTAGGGAATCAGAT 110
Query 58 CTAGGGATCTCCGACGAAGCATCTTGGCACGCTAAATACAAAGATTCAGCCTACGTTTAC 117
|||| || || || ||||| || ||||||||||| |||||| | || || || || |||
Sbjct 111 TTAGGAATATCTGATGAAGCTTCATGGCACGCTAAGTACAAAAACTCTGCATATGTCTAC 170
Query 118 GTCGGA-GAATTACTGTACGATTTAACGGAGGGTGACCTCCTCGCCGTTTTCGCACAATA 176
|||||| | | ||| || |||| | || || ||||| || |||||||| ||| | |||||
Sbjct 171 GTCGGAGGCA-TACCGTTCGATCTCACCGAAGGTGATCTTCTCGCCGTCTTCTCTCAATA 229
Query 177 TGGTGAAGTTGTTGATGTGAATCTTGCTCGAGATAAAGGAACTGGG-AAATCAAAAGGAT 235
||||||| |||||||||| |||||| |||||| || ||||| ||| ||||| ||||| |
Sbjct 230 TGGTGAAATTGTTGATGTCAATCTTATTCGAGACAAGGGAAC-GGGTAAATCTAAAGGTT 288
Query 236 TTGCGTTTGTTGCTTATGAAGATCAGAGAAGTACAAATCTTGCTGTTGATAATCTGAATG 295
|||| ||| ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 289 TTGCTTTTCTTGCTTATGAAGATCAGAGAAGTACCATTCTTGCTGTTGATAATCTGAATG 348
Query 296 GAGCTAAGGTTTTGGGAAGAATCATAAAAGTGGAGCATTGTGGTAAATACTCAaag-aga 354
||||| || |||||| | | ||| || ||||| |||||||| |||| |||| |
Sbjct 349 GAGCTCTTGTGTTGGGACGGACCATTAAGGTGGACCATTGTGGGGCATACAAAAAGCAC- 407
Query 355 gaagaggatgatgaagagacga-a-gcataagaagagagaagCTCGTGGTGTTTGCAGAG 412
|||||||| |||||||||||| | || | ||| ||||| ||||||||||| |||||||
Sbjct 408 GAAGAGGAGGATGAAGAGACGCGACGCC-A-GAATAGAGAGGCTCGTGGTGTATGCAGAG 465
Query 413 CTTTTCAGAGAAAGGA-A-TGTACTCGTGGAGATGGTTGCAAATTTTCTCACGATGAAAA 470
||||||||||| ||| | ||||||||||| ||| |||||||||||| |||||||||||
Sbjct 466 CTTTTCAGAGA--GGAGAGTGTACTCGTGGTGATTCTTGCAAATTTTCCCACGATGAAAA 523
Query 471 CAGAGGTGCCAATACCGGCTGGGGTCACGAAGACCG-TAGAAGTTCCAGGTG 521
|||| ||| ||||| || |||||||| ||||| | ||||||||||| |||
Sbjct 524 AAGAGCTGCAAATACTGGTTGGGGTCATGAAGAG-GATAGAAGTTCCAAGTG 574
Score = 126 bits (68), Expect = 2e-28
Identities = 120/144 (83%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 382 aagaagagagaagCTCGTGGTGTTTGCAGAGCTTTTCAGAGAAAGGA-A-TGTACTCGTG 439
||||| ||||| | |||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 585 AAGAATAGAGAGGGTCGTGGTGTTTGCAGAGCTTTTCAGAGA--GGAGAGTGTACTCGTG 642
Query 440 GAGATGGTTGCAAATTTTCTCACGATGAAAACAGAGGTGCCAA-TACCGGCTGGGGTCAC 498
| ||| ||| |||||||| || |||||||| |||| ||| || ||| || ||||||||
Sbjct 643 GTGATTCTTGTAAATTTTCACATGATGAAAAAAGAGCTGC-AACTACTGGTTGGGGTCAT 701
Query 499 GAAGACCG-TAGAAGTTCCAGGTG 521
||||| | ||||||||||| |||
Sbjct 702 GAAGAG-GATAGAAGTTCCAAGTG 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24966371059
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5