BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358185

Length=744
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59650.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   311    7e-84


> AT5G59650.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr5:24031346-24035100 FORWARD LENGTH=2679
Length=2679

 Score =  311 bits (168),  Expect = 7e-84
 Identities = 196/209 (94%), Gaps = 3/209 (1%)
 Strand=Plus/Plus

Query  289  ATT-GGAGCTTTTGCCGTTATTGGTTGTGTTCGAGCGCAGGATCAACAAGAGTTTATCAG  347
            ||| |||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||
Sbjct  33   ATTAGGAGCTTTTGCCATTATTGGTTGTGTTCAAGCTCAGGATCAACAAGAGTTTATCAG  92

Query  348  TTTGGATTGTGGGTTACCCGTGAGTGAACCGTCTTCTTATGTTGAGTCAGTAACCGGACT  407
            ||||||||| ||||||||| ||| ||||||||||||||||  ||||||||||||||||||
Sbjct  93   TTTGGATTGCGGGTTACCCATGACTGAACCGTCTTCTTATACTGAGTCAGTAACCGGACT  152

Query  408  ACGGTTCTCGTCTGATGCTGAATTCATCCAGACTGGTAAAAGTGGTAAAATCCAGGCGAA  467
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct  153  ACGGTTCTCGTCTGATGCTGAATTCATCCAGACTGGTGAAAGTGGTAAAATCCAGGCGAG  212

Query  468  TATGGAGAATGACTAC-TTGAAGCCGTAC  495
            |||||||||||||||| || |||||||||
Sbjct  213  TATGGAGAATGACTACCTT-AAGCCGTAC  240


 Score =  211 bits (114),  Expect = 7e-54
 Identities = 140/152 (92%), Gaps = 3/152 (2%)
 Strand=Plus/Plus

Query  492  GTACCCGGATGATGTTTATGATCGCAGATGGCGTAATTTCTTTTTGGTGG--G-TTGGAC  548
            ||||||||||||| |||||||||||||||||| ||||| |||| ||||||  | ||||||
Sbjct  621  GTACCCGGATGATATTTATGATCGCAGATGGCATAATTACTTTATGGTGGATGATTGGAC  680

Query  549  CCAAATTTCCACCACTCTTGAAGTGAGCAATGATAACGATTATCAACCACCAAAAAAGGC  608
            |||||||| ||||||||| ||||||| |||||||||| ||||| ||||||||||||||||
Sbjct  681  CCAAATTTTCACCACTCTCGAAGTGACCAATGATAACAATTATGAACCACCAAAAAAGGC  740

Query  609  TCTTGCAGCGGCTGCCACGCCTTCTAATGCCA  640
            ||||||||||||||||||||||||||||||||
Sbjct  741  TCTTGCAGCGGCTGCCACGCCTTCTAATGCCA  772



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36118351693


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5