BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358204

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59870.1 | Symbols: HTA6 | histone H2A 6 | chr5:24115381-241...   640    0.0  


> AT5G59870.1 | Symbols: HTA6 | histone H2A 6 | chr5:24115381-24116220 
REVERSE LENGTH=753
Length=753

 Score =  640 bits (346),  Expect = 0.0
 Identities = 419/454 (92%), Gaps = 5/454 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAACCACCGCAAAAGTGAAGAAAGCTTTCGGAGGAAGAAAA-C-CC-GGTGGCGCA  57
            |||||| |||||| ||||||||||||||||||||||||||||||| | || |||| | ||
Sbjct  77   ATGGAATCCACCGGAAAAGTGAAGAAAGCTTTCGGAGGAAGAAAACCACCTGGTGCCCCA  136

Query  58   AGAACCAAATCGGTTTCGAAATCAATCAAAGCCGGTCTTCAATTTCCGGTTGGTAGAATC  117
            | ||||||||||||||||||||| || ||||||||||||||||| || || || ||||||
Sbjct  137  AAAACCAAATCGGTTTCGAAATCGATGAAAGCCGGTCTTCAATTCCCAGTGGGAAGAATC  196

Query  118  ACTCGTTTCCTGAAGAAAGGACGATACGCTCAGAGACTTGGTGGTGGTGCTCCGGTTTAC  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  197  ACTCGTTTCCTGAAGAAAGGACGATACGCTCAGAGACTTGGTGGTGGTGCTCCGGTTTAC  256

Query  178  ATGGCCGCCGTGCTTGAATACCTCGCCGCTGAAGTTCTGGAGCTTGCTGGTAACGCTGCG  237
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  257  ATGGCCGCCGTTCTTGAATACCTCGCCGCAGAAGTTCTGGAGCTTGCTGGTAACGCTGCG  316

Query  238  AGAGATAACAAGAAGTCAAGGATCATTCCGAGGCATCTTCTTCTTGCGATAAGGAACGAT  297
            |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct  317  AGAGATAACAAGAAATCAAGGATAATTCCGAGGCATCTTCTTCTCGCGATAAGGAACGAT  376

Query  298  GAAGAATTGGGGAAGCTTCTAAGTGGAGTCACAATCGCTCACGGTGGTGTATTGCCTAAC  357
            |||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct  377  GAAGAATTGGGGAAACTTCTGAGTGGTGTCACAATCGCTCACGGTGGTGTTTTGCCTAAC  436

Query  358  ATTAATTCTGTTCT-TCTACCTAAGAAGACTGCAACTAAATCAACCGAAGAAAAGGCGAC  416
            || || |||||||| | | ||||||||| |||| |||||| || | ||||||||||| ||
Sbjct  437  ATCAACTCTGTTCTAT-TGCCTAAGAAGTCTGCCACTAAACCAGCTGAAGAAAAGGCTAC  495

Query  417  CAAATCTCCAGTCAAGTCTCCAAAGAAAGCTTAA  450
            |||||| |||||||||||||||||||||||||||
Sbjct  496  CAAATCACCAGTCAAGTCTCCAAAGAAAGCTTAA  529



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5