BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358205

Length=450
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59870.1 | Symbols: HTA6 | histone H2A 6 | chr5:24115381-241...   553    6e-157


> AT5G59870.1 | Symbols: HTA6 | histone H2A 6 | chr5:24115381-24116220 
REVERSE LENGTH=753
Length=753

 Score =  553 bits (299),  Expect = 6e-157
 Identities = 404/454 (89%), Gaps = 9/454 (2%)
 Strand=Plus/Plus

Query  1    ATGGAAACCACCGCAAAAGTAAAGAAAGCTTTCGGGGGAAGAAAA-C-CC-GGTGGTCCA  57
            |||||| |||||| |||||| |||||||||||||| ||||||||| | || ||||  |||
Sbjct  77   ATGGAATCCACCGGAAAAGTGAAGAAAGCTTTCGGAGGAAGAAAACCACCTGGTGCCCCA  136

Query  58   AGAACCAAATCGGTTTCGAAATCAATCAAAGCCGGTCTCCAATTCCCGGTTGGTAGAATC  117
            | ||||||||||||||||||||| || ||||||||||| |||||||| || || ||||||
Sbjct  137  AAAACCAAATCGGTTTCGAAATCGATGAAAGCCGGTCTTCAATTCCCAGTGGGAAGAATC  196

Query  118  ACTCGTTTCCTGAAGAAAGGACGGTACGCTCAAAGACTCGGTGGTGGTGCTCCGGTTTAC  177
            ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||
Sbjct  197  ACTCGTTTCCTGAAGAAAGGACGATACGCTCAGAGACTTGGTGGTGGTGCTCCGGTTTAC  256

Query  178  ATGGCCGCTGTTCTCGAATACCTCGCCGCCGAAGTTCTGGAGCTAGCTGGTAACGCTGCG  237
            |||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  257  ATGGCCGCCGTTCTTGAATACCTCGCCGCAGAAGTTCTGGAGCTTGCTGGTAACGCTGCG  316

Query  238  AGAGACAACAAGAAGA-CTAGGATAATTCCGAGGCATCTTCTTCTTGCGATAAGGAACGA  296
            ||||| |||||||| | | |||||||||||||||||||||||||| ||||||||||||||
Sbjct  317  AGAGATAACAAGAA-ATCAAGGATAATTCCGAGGCATCTTCTTCTCGCGATAAGGAACGA  375

Query  297  TGAAGAATTGGG-AAAGCTTCTCAGTGGAGTCACAATTGCTCATGGTGGTGTTTTGCCTA  355
            |||||||||||| ||| ||||| ||||| |||||||| ||||| ||||||||||||||||
Sbjct  376  TGAAGAATTGGGGAAA-CTTCTGAGTGGTGTCACAATCGCTCACGGTGGTGTTTTGCCTA  434

Query  356  ATATAAACTCTGTTCTTTTGCCTAAGAAGACTGCTTCAAAATCAACCGAAGAAAAGGCTG  415
            | || ||||||||||| |||||||||||| ||||  | ||| || | |||||||||||| 
Sbjct  435  ACATCAACTCTGTTCTATTGCCTAAGAAGTCTGCCACTAAACCAGCTGAAGAAAAGGCTA  494

Query  416  GCAAATCACCAG-CAAAATCTCCCAAGAAAGCTT  448
             ||||||||||| |||  ||||| ||||||||||
Sbjct  495  CCAAATCACCAGTCAAG-TCTCCAAAGAAAGCTT  527



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21414061074


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5