BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358221
Length=1503
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60050.1 | Symbols: | BTB/POZ domain-containing protein | c... 2377 0.0
> AT5G60050.1 | Symbols: | BTB/POZ domain-containing protein |
chr5:24183567-24185629 REVERSE LENGTH=1978
Length=1978
Score = 2377 bits (1287), Expect = 0.0
Identities = 1439/1511 (95%), Gaps = 15/1511 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCAAGAGAAGTATCAACGATGATCAAACAAGGGTTTATCGCAGACCCTtctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 ATGGCGTCAAGAGAAGTATCAACGATGATCAAACAAGGGTTTATCGCAGACCCTTCTCTC 425
Query 61 tctttttctccgtcaagaatcacatctccggttaaactct------cctctcctcctctt 114
||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 426 TCTTTTTCTCCGTCAAGAATCTCATCTCCGATTAAACTCTCCACCGCCTCTCCTCCTCTT 485
Query 115 cctccgccacctcctccgccgccgccgccAAACGTATCGGCTCACTCAAATCCGACTCTT 174
||||||||||||||| ||||| ||||||| |||| ||| |||||| |||||||||
Sbjct 486 CCTCCGCCACCTCCT------CCGCCACCAAACGAATCGACTCTCTCAAACCCGACTCTT 539
Query 175 TTCGACATGATGTCAGACGAGCACAACCGCGAGCTACCACGGAGGAAATCTCACGCGCGT 234
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 540 TTCGATATGATGTCAGACGAGCACAACCGCGAGCTACCAAGGAGGAAATCTCACGCGCGC 599
Query 235 GTGGCTCAAATCTTGACGGAGTTCAAGAACGGCGTCGTTTACGGCCATAGTCTTGGGCCA 294
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 600 GTGGCTCAAATCTTGACGGAGTTCAAGAACGGCGTCGTTTACGGCCACAGCCTCGGGCCA 659
Query 295 GGCGACGTTAAGCTGACTGTGGTGGGTAAAGACGGTTACAGAGTCACCATGGATGTTCAT 354
|| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 660 GGAGACGTTAAGCTGACTGTGGTGGGCAAAGACGGTTACAGAGTCACTATGGATGTTCAT 719
Query 355 AGGAAGGTTTTATCAGAGAAGAGCAGGTTTTTCATGGAGAAGATGAATTCTAGAAGAGAG 414
||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 720 CGGAAGGTTTTATCTGAGAAGAGTAGGTTTTTTATGGAGAAGATGAATTCTAGAAGAGAG 779
Query 415 AAAGGAGTATCTCACATGGTGGAGATAAGTGAGTGTGATGATTTAGAGATTTATGTAGAG 474
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AAAGGAGTTTCTCACATGGTGGAGATAAGTGAGTGTGATGATTTAGAGATTTATGTAGAG 839
Query 475 ACTGTGGTTTTGATGTATAGTGATGATCTCAAGAAGAAGTTGATCGGTGAAAATGTCATC 534
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 ACTGTTGTTTTGATGTATAGTGATGATCTCAAGAAGAAGTTGATCGGTGAAAATGTCATC 899
Query 535 AAAATCTTGGCTTTACTCAAGGTTTCTGCAGCTATCTCGTTTGATGAAGGAGTTATGTCA 594
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 AAAATCTTGGCTTTACTCAAGGTTTCTGCAGCTATCTCGTTTGATGAAGGCGTTATGTCA 959
Query 595 TGTTTGAAGCATTTGGAAGCTGTTCCTTGGTCAGAAGATGAAGAAGAGATTGTTGTTTCT 654
|||||| |||||||||||||||| || |||||||||||||||||||||| |||||| ||
Sbjct 960 TGTTTGGAGCATTTGGAAGCTGTACCATGGTCAGAAGATGAAGAAGAGACTGTTGTGACT 1019
Query 655 TGTCTTGAAGAGCTTCATCTTCCTGACGATTCTGTCACTTTGATTCTTCAGAGAGTTTCA 714
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1020 TGTCTTGAAGAGCTTCATCTTCCTGATGATTCTGTCACTTTGATTCTTCAGAGAGTTTCA 1079
Query 715 TCTCAACCTACCCCTTCCTCAACGAGAACTAGAACCGATGATATCTTCTT-GAAGCTTCT 773
||||||||| | |||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 1080 TCTCAACCTTCGACTTCCTCAACGAGAACTAGAACTGATGATATCTT-TTCGAAGCTTCT 1138
Query 774 CACTGGTGTTCTACAAGCGAAAGATGATAAAGCTCGGCGAGAGATGAAAGTTTTGATCTT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CACTGGTGTTCTACAAGCGAAAGATGATAAAGCTCGGCGAGAGATGAAAGTTTTGATCTT 1198
Query 834 TAAATTGGTCAGAGAAGAAGCTGATTATGATGTCTCTAAAGACACACTCTATGGTTTGTG 893
||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1199 TAAATTGGTTAGAGAAGAAGCCGATTATGATGTCTCTAGAGACACACTCTATGGTTTGTG 1258
Query 894 TCATCGATGTCTCACGTCTCTTGTGCTTTGCTTATCTGAAGTGACCACACAGATGAATGA 953
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCATCGATGTCTCACGTCTCTTGTGCTTTGCTTATCTGAAGTGACCACACAGATGAATGA 1318
Query 954 TCCGGGGATAGACCGTGGTGCTCTGATGGGAGAAATCGCCAGAGAAGCTGATAACATACT 1013
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1319 TCCGGGGAAAGACCGTGGTGCTCTGATGGGAGAAATCGCCAGAGAAGCTGATAACATGCT 1378
Query 1014 GTGGATGGTAGATATATTGATTGAGAAGAAACTGTGCGGTGAGTTTGTGAAACTATGGGC 1073
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1379 GTGGATGGTAGATATATTGATTGAGAAGAAACTGTGCAGTGAGTTTGTGAAACTATGGGC 1438
Query 1074 GGATCAAAAGGAGCTAGCGAATCTTCATTCCAAGATCCCGACGATGTACAGACACGAAAT 1133
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1439 GGATCAAAAGGAGCTAGCGAATCTTCATTCCAAGATCCCAACGATGTACAGACACGAAAT 1498
Query 1134 AAGCAAGATCACTGCGCAGATATGTGTTGGTATTGGTAAAGGAAAGATCTTGGTGAATCG 1193
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1499 AAGCAAGATCACCGCGCAGATATGTGTTGGTATTGGTAAAGGAAGGATCTTGGTGAATCG 1558
Query 1194 GGAGACTAGGTTTGCGGTTCTGAATACATGGTTAGAGGCTTTGTATGATGATTTCGGGTG 1253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GGAGACTAGGTTTGCGGTTCTGAATACATGGTTAGAGGCTTTGTATGATGATTTCGGGTG 1618
Query 1254 GATGAGACGGTTATCCTCAAGATCTCTGGATAGGAAACTGGTGGAGGATGGACTCAGCCA 1313
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GATGAGACGGTTATCCTCGAGATCTCTGGATAGGAAACTGGTGGAGGATGGACTCAGCCA 1678
Query 1314 GACCATATTGACCTTGTCGTTGAGACAACAGCAGGTGATTCTGATGAAATGGTTTGATCG 1373
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1679 GACCATATTGACTTTGTCGTTGAGACAACAACAAGTGATTCTGATGAAATGGTTTGATCG 1738
Query 1374 ATTTCTGACCAAAGGCGATGATTGTCCAAATGTTCAGCGAGCATTTGAGGTGTGGTGGAG 1433
||||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1739 GTTTCTGAGCAAAGGTGATGATTGTCCAAATGTGCAACGAGCATTTGAGGTGTGGTGGAG 1798
Query 1434 AAGAGCTTTCATAAGACAGGTCTTGACAGAGCCAGATGCGCCGCAGCTGCAGATTACACT 1493
||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||
Sbjct 1799 AAGAGCTTTCATAAGACAGGTCTTGACAGAGCCCGATGAGCCTCGGCTGCAGATTACACT 1858
Query 1494 CTAT-GACTAA 1503
|||| ||||||
Sbjct 1859 CTATTGACTAA 1869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74146204965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5