BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358235
Length=3006
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 2837 0.0
AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) fami... 1090 0.0
> AT5G60170.2 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:24227415-24232873 FORWARD LENGTH=3509
Length=3509
Score = 2837 bits (1536), Expect = 0.0
Identities = 1702/1784 (95%), Gaps = 4/1784 (0%)
Strand=Plus/Plus
Query 1 ATGAGTGACCATGGAGAGAAGACTTGTCCACTGTGTGCTGAAGAGATGGATCTGACCGAT 60
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 145 ATGAGTGACCATGGTGAGAAGACTTGTCCACTTTGTGCTGAAGAGATGGATCTGACTGAT 204
Query 61 CAACAATTGAAGCCTTGCAAATGTGGCTATCAGATTTGTGTTTGGTGCTGGCATCACATA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 205 CAACAATTGAAGCCTTGCAAATGTGGTTATCAGATTTGTGTTTGGTGCTGGCATCACATA 264
Query 121 GTGGACATGGCAGAGAAAGATCAAATAGAAGGGCGTTGTCCAGCTTGTCGCACTCCCTAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 265 GTGGACATGGCAGAGAAAGATCAAATAGAAGGGCGTTGTCCAGCTTGTCGCACTCCATAT 324
Query 181 GACAAAGAAAAAATTGTAGGGATGACTGTTGATTGCGACAGTCTGGCCTCTGAAGGCAAT 240
||||||||||| |||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 325 GACAAAGAAAAGATTGTAGGGATGACTGTTAATTGTGACAGTCTGGCTTCTGAAGGCAAT 384
Query 241 ATGGAGCGCAAGAAGATCCAGAAGTCAAAATCAAAACCTTCTGAAGGGAGAAAGCAACAA 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 385 ATGGAGCGCAAGAAGATCCAGAAGTCAAAATCAAAATCTTCTGAAGGGAGAAAGCAACAA 444
Query 301 CTCACCAGTGTGCGAGTGATCCAGAGGAATCTTGTCTACATTGTTGGGTTGCCTCTTAAT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 445 CTCACCAGTGTGCGAGTGATCCAGAGGAATCTTGTTTACATTGTTGGGTTGCCTCTTAAT 504
Query 361 CTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAGTTCTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAGTTCTA 564
Query 421 AAGGTTTCGATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAATAATACATGC 480
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 565 AAGGTTTCCATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAACAATACATGC 624
Query 481 AGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAGGCTGTTCAT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 625 AGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAAGCTGTTCAT 684
Query 541 GGGTTTATCTTGGATGGTAAACCACTGAAGGCGTGTTTTGGGACAACCAAATATTGTCAT 600
|||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 685 GGGTTTATCTTGGATGGTAAACCATTGAAGGCATGTTTTGGGACAACCAAGTATTGTCAT 744
Query 601 GCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTGTATTTGCACGAGGTTGGT 660
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 745 GCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTCTATTTGCACGAGGTTGGT 804
Query 661 TCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGGAGTAGAGTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGGAGTAGAGTT 864
Query 721 CAACAAATCACTGGAGCAACAAATATTCTGCAGCACCGTTCAGGGAGCATGCTACCTCCA 780
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 865 CAACAAATCACTGGAGCAACAAATATTCTGCAGCACCATTCAGGGAACATGCTACCTCCA 924
Query 781 CCACTGGATGCTTATTGCAGTGACAGTTCCTCTGCAAAACCAATTATAAAGGTTCCTTCA 840
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 925 CCACTGGATGCTTATTGCAGTGACAGTTCTTCTGCAAAACCAATTATAAAGGTTCCTTCA 984
Query 841 ACTAGTGCAACAAGTGTTCCCAGGTATTCTCCGCCTAGTGAGAGTGGGAGCTCTAGCAGA 900
|||| |||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||
Sbjct 985 ACTAATGCAACTAGTGTTCCCAGGTATTCTCCGCCAAGTGGGAGTGGGAGCTCCAGCAGA 1044
Query 901 TCCACTGCTCTTCCTGCTGCAGCGTCATGGGGGACACATCAGTCTTTAGCAACTTCAGTT 960
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1045 TCCACTGCCCTTCCTGCTGCAGCGTCATGGGGGACACATCAGTCTTTAGCAACTTCGGTC 1104
Query 961 ACCTCAAATGGATCTTCTCATATACAAAGATCAACATCAGTAAATGGAACCTTACCCTTT 1020
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1105 ACCTCAAATGGATCTTCTGATATACAAAGATCAACATCAGTGAATGGAACCTTACCCTTT 1164
Query 1021 TCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATCCTCCAGTGACATTCTTAAAAGA 1080
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1165 TCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATCCTCTAATGACATTCTTAAAAGA 1224
Query 1081 CCATCTCGCAAAGAAGAAAGCCAAATGGTTATGGACAAAGTCAAAACTAGCGTGTTGAAG 1140
|||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||
Sbjct 1225 CCATCTCGCAAAGAAGAAAGCCAAATAGTTATGGACAAAGTCAAACCTAGTGTGTTGAAG 1284
Query 1141 CCCTTGCAGCATAATGTTGTGGTTTCTGGGTCCGAGAGAACTACCTCACCTGATAGAGAT 1200
|||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct 1285 CCCTTGCAGCATAATGTTGTGGTTTCTGGGTCCGAGAGAATTACCGCACCCGATAGAGAT 1344
Query 1201 CCTACTAGCAATCGTTTATCCAGTTCAGTAGACTCTTCCTACGGTGGCAGAGACATTGAC 1260
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1345 CCTACTAGCAATCGTTTATCCAGTTCAGTAGACTCTGCCTACGGAGGCAGAGACATTGAC 1404
Query 1261 CAGCCTTCAGCCTACAGTGGCAGAGACATTGACAAGCCTTCAGCTACTGTGAACTCGTCT 1320
|||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||| |
Sbjct 1405 CAGCCTTCAGCCTACAGTGGCAGAGACATTGACAAGCCTTCATCTACTGTTAGCTCGTTT 1464
Query 1321 GATGATGTAAATGAAGCTGTAGAAGATGGCCCTACTGTACA-CAACTTGTCGGACGGTGT 1379
|||| || |||||||||||||||||||| |||||||||| | |||||||| ||| |||||
Sbjct 1465 GATGCTGCAAATGAAGCTGTAGAAGATGTCCCTACTGTA-AGCAACTTGTTGGATGGTGT 1523
Query 1380 TGCACGCATGGGGATAACTGTGAAATGTAGGGATGAACGTCCTGATATTACAATGGCGAT 1439
|||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1524 TGCATGCATGCGGATAACTATGAATTGTAGGGATGAACGTCCTGATATTACAATGGCGAT 1583
Query 1440 TGGTAGTCAGTGTGATCAAGGTTCTATTAGACAACCTGGT-CATGAAGTATCAAAGTTGC 1498
||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1584 TGGTAGTCAAAGTGATCAAGGTTCTATTAGACAACCTGGTTC-TGAAGTATCAAAGTTGC 1642
Query 1499 CACATTTAGAGAAATGTAGGATGGATAGTTCTATAGACACTGATAAGAAAGCTATCCCGT 1558
|| |||||||| |||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct 1643 CAGATTTAGAGCAATGTAGGATAGATAGTTCTATAAACACTGATAAGAAAGCTATCTCGT 1702
Query 1559 TAGAGGATAGGGTCCCCCGCACAAGGCCAGAGTGGGATTGGAGATCAGATTTGCAATCGC 1618
||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 1703 TAGAGGATAGGATCCCCCGCACTAGGCCAGGGTGGGATTGGATATCAGATTTGCAATCGC 1762
Query 1619 ATATGCAAGGAAGCTCAAAATTGCAAGAGGAGGAAATATTATCATTTGACAGCCAACAGC 1678
| |||||||||||||| |||||||||| |||||| |||| | |||| || ||||||| ||
Sbjct 1763 AAATGCAAGGAAGCTCTAAATTGCAAGTGGAGGATATATCAACATTGGATAGCCAACGGC 1822
Query 1679 ATCACCCTGAAGAGGATATTATCCACTCGCGGTTTCTGTCTAATTTGCCAAGTTCCAGTT 1738
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 1823 CTCACCCTGAAGAGGATATTATCCACTCGCGGTTGCTGTCTAATTTGTCAAGTTCCAGTT 1882
Query 1739 TGGATACAAATCATATGGCTTCTCGTTCTTCCCTGCCTTGTGAA 1782
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1883 TGGATACAAATCATATGGCTTCTCGTTCTTCCCTACCTTGTGAA 1926
Score = 1783 bits (965), Expect = 0.0
Identities = 1118/1190 (94%), Gaps = 17/1190 (1%)
Strand=Plus/Plus
Query 1824 TAGAGGCAGTGATAGATTGCATCTTCCAAATGGATTTGGTGAGAGATCCATATCCAGTGT 1883
||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1929 TAGGGGCAGTGATAGATTGCATCTTCCAAATGGATTTGGTGAGAAATCCATGTCCAGTGT 1988
Query 1884 GGAGCATTCTCTGTTTGCTAATGAAGACAGGAACAAAGTCAACAATGTAGAGGATCCTAT 1943
|||||| |||||||| || ||||||| |||||||||||||||||||| ||||||| ||||
Sbjct 1989 GGAGCACTCTCTGTTCGCAAATGAAGGCAGGAACAAAGTCAACAATGCAGAGGATGCTAT 2048
Query 1944 ACTTTCGAACATTTTGTCACTCGATTTTGATCCATGGGATGAATCCTTGACTTCTCCCCA 2003
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 ACTTTCAAACATTTTGTCACTCGATTTTGATCCATGGGATGAATCCTTGACTTCTCCCCA 2108
Query 2004 CAATTTGGCAGAGTTACTCGGTGAAGTTGATCAGCAATCTAGTACTCTTAAACCTTCAAA 2063
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 2109 CAATTTGGCAGAGTTACTAGGTGAAGTTGATCAGCGATCTAGTACTCTTAAACCTTCAAA 2168
Query 2064 CCTCCTAAAGCAACATAACAACCAGTCTAGATTTTCTTTTGCACGGTATGAAGAATCTAG 2123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2169 CTTCCTAAAGCAACATAACAACCAGTCTAGATTTTCTTTTGCACGGTATGAAGAATCTAG 2228
Query 2124 TAATCAAGCATATGACAGTGAGAACCT-TAGCACTTATGGGCAGTTTTCAAGAGATCAAC 2182
||||||||||||||||||||||||| | ||||| |||||||||||| ||||||||| |||
Sbjct 2229 TAATCAAGCATATGACAGTGAGAAC-TATAGCATTTATGGGCAGTTGTCAAGAGATAAAC 2287
Query 2183 CTATTCAGGAGTCAGT-AGTGAGCCGAGATATCTATCGAAATAATCTCGGGAGCCTAAAT 2241
||||||||||||| | | ||||||||||||||||||||||||| || ||||| |||||
Sbjct 2288 CTATTCAGGAGTCTGCCA-TGAGCCGAGATATCTATCGAAATAACCTTGGGAGTGTAAAT 2346
Query 2242 GGATTTGCTTCAAACTACGCTGGTGGATTGGATAACTTTGCTGCTAGTCCTTTATTCTCT 2301
|||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 2347 GGATTTGCTTCAAACTTCGCTGGTGGATTGGATAACTTTGCCGCTAGTCCTTTATTTTCT 2406
Query 2302 TCGCACAAAAATCCTGTTTCACGACCCCAAGTTTCTGCACCGCCAGGATTTTCTGCTCCC 2361
|||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 2407 TCGCACAAGAATCCTGTTTCACGACCTCAAGTTTCTGCGCCTCCAGGATTTTCTGCTCCC 2466
Query 2362 AACAGGCTACCTCCTCCTGGCTTCTCTTCACATGAAAGAGTGGGCCTATCTTCAGATACC 2421
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2467 AACAGGCTACCTCCTCCTGGCTTCTCGTCACATGAAAGAGTGGGCCTATCATCAGATACT 2526
Query 2422 GCACTAGGAACTCGATTTCTTGACTCTACCTCCATATTGAGGAATGCATATCAAGTACCA 2481
||||||||| |||||||||||||||||| || || | ||||||||||||||||||||||
Sbjct 2527 ACACTAGGAAATCGATTTCTTGACTCTACTTC-AT-T-GAGGAATGCATATCAAGTACCA 2583
Query 2482 CCTCCAGTTGGTAATTCAAATGGTGCAAGTGATATTGACTTTGTGGATCCTGCAATTCTA 2541
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2584 CCTCCAGTTGGTAATTCAAATGGTGCAAGTGATATCGACTTTGTGGATCCTGCAATTCTA 2643
Query 2542 GCTGTTGGAAGAGGGCTGGTAAATGCAGACTTGGATC-TGAGATCAGGATTCTCATCACA 2600
||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 2644 GCTGTTGGAAGAGGGATGGTAAATGCTGACTTGGA-CATGAGATCAGGATTCTCATCACA 2702
Query 2601 ACTGAATTCTTTTGAAAACGAAACAGGGCTCCATATGTTGAGACAGCAGTCCCTGTCTTC 2660
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 2703 ACTGAATTCTTTTGAAAACGAAACAGGACTCCATATGTTGAGACAGCAGTCTCTGTCTTC 2762
Query 2661 TGCACACCAACAAGTTAATGGGTTTCATCATGATCTCAGAAACGTATCTCCTTCACTTAA 2720
|||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2763 TGCACA--A-CAAGTTAATGGGTTTCATCATGATCTCAGAAACTTATCTCCTTCACTTAA 2819
Query 2721 CGATCCTTATGGATTTAGCGCAAGGCTAATGGATCAAACACAGGGAAGTAGCTTATCTCC 2780
||| ||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||
Sbjct 2820 CGACCCTTACGGATTTAGCTCAAGGCTTATGGATCAAACACAGGGAAGTAGCTTGTCTCC 2879
Query 2781 TTTCTCACAGCTCCCAAGGCAACAACCATCTGCGAATTCAATCTTG-CCTAATGGTCA-C 2838
|||||||||||||||||| |||||||||||||| |||||||||||| || |||||||| |
Sbjct 2880 TTTCTCACAGCTCCCAAGACAACAACCATCTGCAAATTCAATCTTGTCC-AATGGTCATC 2938
Query 2839 --TGGGATAAGTGGAATGAAGGGCAAAGTGTGAACAATATAGGCATGGCCAATCTTCTTA 2896
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 2939 ACTGGGATAAGTGGAATGAAGGGCAAAGTGTGAACAATATAGGCATGGCCGAGCTTCTTA 2998
Query 2897 GGAATGAACGGCTGGGTTTTAATGGGAGCTTGTACAACAACGGATATGAAGAATCGAAAT 2956
||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 2999 GGAATGAACGGCTGGGTTTTAATGGGAGCTTATACAACAACGGATATGAAGAACCAAAAT 3058
Query 2957 TCCGGATTCCAAGTCCTGGAGATGTGTATAACAGGACATATGGGATTTGA 3006
|||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 3059 TCCGGATTCCAAGTCCCGGTGATGTGTATAACAGGACATATGGGATTTGA 3108
> AT3G45630.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr3:16748174-16753833 REVERSE LENGTH=3555
Length=3555
Score = 1090 bits (590), Expect = 0.0
Identities = 1076/1302 (83%), Gaps = 68/1302 (5%)
Strand=Plus/Plus
Query 1 ATGAGTGACCATGGAGAGAAGACTTGTCCACTGTGTGCTGAAGAGATGGATCTGACCGAT 60
|||||||| | || || |||||||| || |||||||||| ||||||||| |||| ||
Sbjct 98 ATGAGTGATTACGGTGAAAAGACTTGCCCTTTGTGTGCTGAGGAGATGGATTTGACTGAC 157
Query 61 CAACAATTGAAGCCTTGCAAATGTGGCTATCAGATTTGTGTTTGGTGCTGGCATCACATA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 158 CAGCAATTGAAGCCTTGCAAATGTGGCTATCAGATTTGTGTTTGGTGCTGGCACCATATA 217
Query 121 GTGGACATGGCAGAGAAAGATCAAAT-AGAAGGGCGTTGTCCAGCTTGTCGCACTCCCTA 179
||||||||||||||||||||||| | ||||||||| ||||||||||| |||||||| ||
Sbjct 218 ATGGACATGGCAGAGAAAGATCAA-TCAGAAGGGCGCTGTCCAGCTTGCCGCACTCCATA 276
Query 180 TGACAAAGAAAAAATTGTAGGGATGACTGTTGATT-GCGACAGTCTGGCCTCTGAAGGCA 238
|||||||||||| ||||| ||||||||||||||| | || || ||||||||||||||||
Sbjct 277 TGACAAAGAAAAGATTGTTGGGATGACTGTTGATCAG-GAGAGACTGGCCTCTGAAGGCA 335
Query 239 ATATGGAGCGCAAGAAGATCCAGAAGTCAAAATCAAAACCTTCTGAAGGGAGAAAGCAAC 298
| ||||| ||||| || || || ||||| ||| | ||| ||||||| |||||||||| |
Sbjct 336 ACATGGATCGCAAAAAAATACAAAAGTCGAAACCGAAATCTTCTGATGGGAGAAAGC--C 393
Query 299 AACTCACCAGTGTGCGAGTGATCCAGAGGAATCTTGTCTACATTGTTGGGTTGCCTCTTA 358
| || || ||||| |||||| | || || |||||||| ||||||||||| ||||| ||||
Sbjct 394 A-CTAACAAGTGTCCGAGTGGTTCAAAGAAATCTTGTTTACATTGTTGGATTGCCCCTTA 452
Query 359 ATCTAGCCGATGAAGATCTACTCCAACATAAAGAATATTTTGGTCAGTATGGAAAAGTTC 418
||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| ||||
Sbjct 453 ATCTAGCAGATGAAGATCTTCTCCAGCGTAAAGAATATTTTGGTCAGTATGGAAAGGTTC 512
Query 419 TAAAGGTTTCGATGTCCCGAACAGCATCTGGTGTCATCCAACAATTCCCAAATAATACAT 478
|||||||||||||||||||||||||| | ||| |||||||||| || || || || ||||
Sbjct 513 TAAAGGTTTCGATGTCCCGAACAGCAACAGGTCTCATCCAACAGTTTCCTAACAACACAT 572
Query 479 GCAGTGTATATATTACTTATGGAAAAGAGGAAGAGGCTGTTCGCTGCATTCAGGCTGTTC 538
|||||||||| || || ||||| |||||||||||||| |||| || |||||| ||||||
Sbjct 573 GCAGTGTATACATCACATATGGCAAAGAGGAAGAGGCCATTCGATGTATTCAGTCTGTTC 632
Query 539 ATGGGTTTATCTTGGATGGTAAACCACTGAAGGCGTGTTTTGGGACAACCAAATATTGTC 598
||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |
Sbjct 633 ATGGGTTTATCTTGGATGGTAAAGCACTGAAGGCATGTTTTGGGACAACCAAGTATTGCC 692
Query 599 ATGCATGGCTGAGAAATGTGGCATGCGTCAATCCTGATTGTCTGTATTTGCACGAGGTTG 658
|||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||||||
Sbjct 693 ATGCATGGTTGAGAAACGTGGCATGCAACAATCAGGATTGCCTCTATTTGCATGAGGTTG 752
Query 659 GTTCTCAAGATGATAGCTTCACAAAAGATGAGATCATATCAGCCTATACAAGGAGTAGAG 718
| |||||||| ||||| || |||||||||||||||||||||||| ||||||| |||
Sbjct 753 GCTCTCAAGAGGATAGTTTTACAAAAGATGAGATCATATCAGCCCATACAAG-AGT---- 807
Query 719 TTCAACAAATCACTGGAGCAACAAATATTCTGCAGCACCGTTCAGGGAGCATGCTACCTC 778
| || |||||||||||||||||||||| | |||| ||||||||||||||||||||||||
Sbjct 808 T-CAGCAAATCACTGGAGCAACAAATACTATGCAATACCGTTCAGGGAGCATGCTACCTC 866
Query 779 CACCACTGGATGCTTATTGCAGTGACAGTTCCT-CTGCAAAACCAATTATAAAGGTTCCT 837
||||| ||||||||||| |||||||||||| | ||| ||| |||||| ||| ||||||
Sbjct 867 CACCATTGGATGCTTATACCAGTGACAGTTC-TACTGGAAATCCAATTGCAAAAGTTCCT 925
Query 838 TCAACTAGTGCAACAAGTGTTCCCAGGTA-TTCTCCGCCTAGTGAGAG-TGGGAGCTCTA 895
|| | || | || |||| ||| | | | ||| || ||||||| ||| | || | | |
Sbjct 926 TCTAGTACTTCAGTTAGTGCTCCTAAG-AGTTCCCCACCTAGTGGGAGCTCGG-G-T--A 980
Query 896 GCAGATCCACTGCTCTTCCTGCTGCAGCGTCATGGGGG--AC----A-CA--TCAG---T 943
| ||| |||||||||||||||||||| ||||||||| || | || ||| |
Sbjct 981 --A-ATCAACTGCTCTTCCTGCTGCAGCATCATGGGGGGCACGTTTAACAAATCAACACT 1037
Query 944 CTTTAGCAACTTCAG-TTACCTCAAATGGATCTTCTC-ATA-TACAAAGATCAACATCAG 1000
||||||||||||||| || ||||||||||||| | ||| | ||||||||||||||||
Sbjct 1038 CTTTAGCAACTTCAGCTTTG-TCAAATGGATCTT-TGGATAAT-CAAAGATCAACATCAG 1094
Query 1001 TA-AATGGAACCTTACCCTTT-TCTGCTGTTGTTGCAAACGCAGCTCATGGGCCTGTATC 1058
| |||||||| || | | ||| | |||||| |||| |||||| |||||||||||||
Sbjct 1095 -AGAATGGAACTTTGGC-TACGTCTACAGTTGTTACAAAGGCAGCTAATGGGCCTGTATC 1152
Query 1059 CTCCAGTGACATTCTT-A-AAAG-ACCATCTCGCAAAGAAGAAAGCCAA--AT-GGTTAT 1112
||| ||| ||| |||| | |||| ||| |||| || ||||||| ||| || || |
Sbjct 1153 CTCTAGTAACAGTCTTCAGAAAGCACC-TCTC--AAGGAAGAAATTCAATCATTGGCT-- 1207
Query 1113 GGACAAAGTCAAAACTAGCGTGTTGAAGCCCTTGCAGCATAATG-TTGTGGTT---TCTG 1168
| | |||| |||| || | ||||||||||| |||||||| || | ||||| || ||
Sbjct 1208 GAAAAAAG-CAAACCTGGTGTGTTGAAGCCTTTGCAGCAGAA-GATTGTG-TTGGATCCC 1264
Query 1169 G-GTCCGAGAGAACTACCTCACCTGATAGAGATCCTACTAGCAATC-GTTTATCCAGTTC 1226
| |||| |||||||||| |||||| ||||||| |||| |||||||| | | |||| |||
Sbjct 1265 GAGTCCAAGAGAACTACATCACCTAATAGAGACCCTAGTAGCAATCAGAT-ATCCTGTTT 1323
Query 1227 AGTAGACTCTTCCTACGGTGGCAGAGACATTGACCAGCCTTC 1268
|||||| ||||||||| | |||||| ||||||| |||||||
Sbjct 1324 AGTAGAGTCTTCCTACAATAGCAGAGTCATTGACAAGCCTTC 1365
Score = 625 bits (338), Expect = 9e-178
Identities = 1013/1324 (77%), Gaps = 106/1324 (8%)
Strand=Plus/Plus
Query 1739 TGGATACAAATCATATGGCTTCTCGTTC-TTCCCTG--CCTTGTGAAATTTCAGGTGTGA 1795
||||| |||||||| | ||||||||||| || || | || | |||| ||| ||| ||
Sbjct 1794 TGGATTCAAATCATCTAGCTTCTCGTTCGTT-CCAGAACC--GGGAAACTTCTTGTGGGA 1850
Query 1796 ACGATTC-AAATTTGAGGTCCT-CTTTGGATAGAGGCAGTGATAGATTGCATCTTCCAAA 1853
||||| ||| || | |||| |||| || | ||| |||||||||||||||||||||||
Sbjct 1851 TGGATTCAAAAACTG-GATCCTCCTTT-GAAATAGGTAGTGATAGATTGCATCTTCCAAA 1908
Query 1854 TGGATTTGGTGAGAGATCCATATCCAGTGTGGAGCATTC-TCTGTTTGCTAATGAAGACA 1912
||||||| ||||| | | || |||| | |||||||||| | | ||||||||||||| ||
Sbjct 1909 TGGATTTTCTGAGAAAGCTATGTCCAATATGGAGCATTCAT-TATTTGCTAATGAAGGCA 1967
Query 1913 GGAA-CAA-AGTCAACAATGTAGAGGATCCTAT-ACTTTCGAACATTTTGTCACTCGATT 1969
| || ||| | ||| ||| ||||||| ||| | |||| |||||||| | || |
Sbjct 1968 G-AAGCAACATTCAG-AATACAGAGGATGATATCA-TTTCAAACATTTT---A---GACT 2018
Query 1970 TTGATCCATGGGATGAATCCTTGACTTCTCCCCACAATTTGGCAGAGTTACTCGGTGA-A 2028
||||||| ||||||||||| |||||||| | |||||||| ||| | ||||| ||| | |
Sbjct 2019 TTGATCCCTGGGATGAATCGTTGACTTCGCAACACAATTTTGCAAAATTACTTGGTCAGA 2078
Query 2029 GTTGATCAGCAAT-CTAGTACTCTTAAACCTTCAAACCTCCTAAAGCAACATAACAACCA 2087
|| ||||| | | |||||||| || |||| |||||||||||||||||||| ||||
Sbjct 2079 GT-GATCAT-AGGGCCAGTACTCTGGAATCTTCTAACCTCCTAAAGCAACATAATGACCA 2136
Query 2088 GTCTAGATTTTCTTTTGCACGGTATGAAGAATCTAGTAATCAAGCATATGACAGTGAGAA 2147
|||||| || |||||||| ||| |||||||||| | || |||||| ||||||| | ||||
Sbjct 2137 GTCTAGGTTCTCTTTTGCTCGGCATGAAGAATCAAATAGTCAAGCGTATGACAAT-AGAA 2195
Query 2148 CCTTA--GCACT-TATGGGCAGTTTTCAAGAGATCAACCTATTCAGGAGTCAGTAGTGAG 2204
||| ||| | ||||||||||| ||||||||||| ||| |||| |||| | || ||
Sbjct 2196 G-TTACAGCA-TATATGGGCAGTTGTCAAGAGATCAGCCTCTTCAAGAGTTTGGAGCGAA 2253
Query 2205 CCGAGATATCTATC-GAAATAATCTCGGGAGCCTAAATGGATTTGCTTCAAACTACGCTG 2263
||| ||||| |||| | | ||| || || || | |||||| ||||| |||||||| | |
Sbjct 2254 CCGTGATATGTATCAGGA-TAAGCTTGGCAGTCAAAATGGTTTTGCCTCAAACTATTCCG 2312
Query 2264 GTGGAT-TGGATAACTTTGCTGCTAGTCCTTTATTCTCTTCGCACAAAAATCCTGTTTC- 2321
|||||| || | || |||||| |||||||| ||| ||||| |||| | |||||| |
Sbjct 2313 GTGGATATGAACAA-TTTGCTACTAGTCCTGGATTATCTTCTTACAAGAGTCCTGTGGCG 2371
Query 2322 ACGACCCCAAGTTTCTGCACCGCCAGGATTTTCTGCTCCCAACAGGCTACCTCCTCCTGG 2381
| ||| | |||||||||| || || ||||||||||||||||||||| |||||||||| ||
Sbjct 2372 AGGACTC-AAGTTTCTGCTCCTCCCGGATTTTCTGCTCCCAACAGGTTACCTCCTCCCGG 2430
Query 2382 CTTCTCTTCACATGAAAGAGTGGG-CCTATCTTCAGATACCGCA-CTAGGAACTCGATTT 2439
|||||||||||| |||||| | | ||| ||||| |||| ||| | ||||||||| |||
Sbjct 2431 TTTCTCTTCACATCAAAGAG-GCGACCTGTCTTCTGATATTGCATC-AGGAACTCG-TTT 2487
Query 2440 -CTTGACTCTACCTCCATAT-T-GAGGAATGCATATCAAGTACCACCTCCA-GTTGGTAA 2495
|||||||| | | | || | | |||||| |||||||| |||||||||||| || || ||
Sbjct 2488 ACTTGACTC-AGC-CAATTTGTTGAGGAACGCATATCATGTACCACCTCCAAGT-GGAAA 2544
Query 2496 TTCAAATGGTGCAAGTGATATTGACTTTGTGGATCCTGCAATTCTAGCTGTTGGAAGAGG 2555
|| |||| |||| | |||||||| ||| | |||||||||||| ||||||||||||| ||
Sbjct 2545 TTTGAATGCTGCAGGAGATATTGAGTTTATTGATCCTGCAATTTTAGCTGTTGGAAGGGG 2604
Query 2556 --G-CT-------GG--T--AAAT-GCAGACTTGGATCTGAGATCAGGATTCTCATCACA 2600
| || || | ||| |||||||| ||| |||||||||| ||||| || ||
Sbjct 2605 AAGACTTCATAATGGGATGGAAACAGCAGACTTTGATTTGAGATCAGGGTTCTCTTCTCA 2664
Query 2601 ACTGAATTCTTTTGAAAACGAAACAGGGCTCCATAT-GTTGA-GACAGCAG-TCCCTGTC 2657
||||||||| ||||| || || || | ||||| || |||| | ||| || || ||| |
Sbjct 2665 ACTGAATTCATTTGATAATGATGCAAGACTCCA-ATTGTTGGCG-CAG-AGGTCTCTGGC 2721
Query 2658 TTCTGCACACCAACAAGTTAATGGGTTTCATCATGATCTCAGAAACGTAT-C---T-C-C 2711
| ||||| | ||||| ||||| ||||| | |||| ||| |||||| | | | |
Sbjct 2722 T---GCACA--A-CAAGTCAATGGATTTCA-C--GATCCCAGGAACGTAAACAACTTCTC 2772
Query 2712 TTCA-C-TTAAC-GATCCTTATGG-ATTTAGCGCAAGGCTAATGGATCAAACACAGGGAA 2767
||| | || | || || ||||| ||| ||| | |||| || |||||||||||| ||||
Sbjct 2773 TTCTTCGTTCTCTGACCCATATGGGATT-AGCTCGAGGCCAACGGATCAAACACAAGGAA 2831
Query 2768 GTAGCTTATCTCCTTTCTCACAGCTCCCAAGGCAACAACCATCTGCGAATTCAATCTTGC 2827
| |||| ||||||||| ||||||| || || | ||| | || || ||| || | |||
Sbjct 2832 CTGGCTTGTCTCCTTTCACACAGCTGCCTAG--A-CAAGCTTCAGCAAATCCATTGTTGT 2888
Query 2828 CTAATGGTCACTGGGATAA---GTGGAATGAAGGGCAAAGTG-TGAACAATATAGGCATG 2883
| ||||| ||||||||||| |||||||||| ||||||| | |||||| | || ||
Sbjct 2889 CAAATGGACACTGGGATAATAAGTGGAATGAACCACAAAGTGGT-AACAATCTTGGGATT 2947
Query 2884 GCCAATCTTCTTAGGAATGAACGGCTGGGTTTTAATGGGAGC-TTGTACAACAACGGATA 2942
|| | ||||| |||||||||||| |||||||||||| | | || |||| | || |
Sbjct 2948 ACCCAGCTTCTAAGGAATGAACGGATGGGTTTTAATGACAACGTT-TACAGC---GGTTT 3003
Query 2943 TGAAGAATCGAAATTCCGGATTCCAAGTCCTGGAGATGTGTATAACAGGACATATGGGAT 3002
|||||| | |||||||||| || ||||||||||| ||||||||| ||||| |||||
Sbjct 3004 TGAAGAGCCTAAATTCCGGAGGCCCGGTCCTGGAGATCCGTATAACAGAACATACGGGAT 3063
Query 3003 TTGA 3006
||||
Sbjct 3064 TTGA 3067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149447323197
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5