BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358240
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60220.1 | Symbols: TET4 | tetraspanin4 | chr5:24248957-2425... 1301 0.0
AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733755-1673... 708 0.0
> AT5G60220.1 | Symbols: TET4 | tetraspanin4 | chr5:24248957-24250065
FORWARD LENGTH=984
Length=984
Score = 1301 bits (704), Expect = 0.0
Identities = 813/864 (94%), Gaps = 13/864 (2%)
Strand=Plus/Plus
Query 1 ATGAGATCGAGCAA-TAACCTTATAGGTCTCGTAAACTTCTTCACTTTCCTCCTTTCGAT 59
||||||||||| || |||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1 ATGAGATCGAG-AAGTAACCTTATAGGTCTCATAAACTTCTTCACTTTCCTCCTGTCGAT 59
Query 60 TCCGATCCTCGGCGGTGGAATATGGCTGAGCAGCAGAGCTAACTCAACCGACTGCCTCAG 119
||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||
Sbjct 60 TCCTATCCTCGGCGGTGGAATATGGCTTAGCAGCCGAGCTAACTCAACCGATTGCCTCAG 119
Query 120 ATTCCTCCAGTGGCCACTCATAATCATCGGAATCTCAATCATGGTCGTATCTTTAGCCGG 179
||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 120 ATTCCTCCAGTGGCCACTCATTATCATCGGAATATCAATCATGGTCATATCTTTAGCCGG 179
Query 180 AATCGCTGGAGCTTGTTACCAGAACAAGTTCCTCATGTGGCTTTACCTTTTCGCCATGTT 239
|||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 180 AATCGCCGGAGCTTGTTACCAAAACAAGTTCCTCATGTGGCTTTACCTTTTCACCATGTT 239
Query 240 CTTTGTAATCGCTGCTCTTATAGGATTCATC-ATCTTCGCTTACGCT-GTTACTGATAAA 297
||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||||
Sbjct 240 CTTTGTAATCGCTGCTCTTATAGGATTCA-CAATCTTCGCTTACG-TAGTTACTGATAAA 297
Query 298 GGCTCAGGCCGGTTTGTGATGAACCGTCGGTATCTTGATTATTATCTCCATGATTATTCC 357
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 GGCTCAGGCCGGTTTGTGATGAACCGTCGGTATCTTGATTATTATCTCAATGATTATTCC 357
Query 358 GGTTGGTTGAAGGATCGTGTCACGGATAATGGATATTGGA-ATGAAATTGGATCGTGTGT 416
|||||||| ||||| |||||||| |||||||||||||||| | || || |||||||||||
Sbjct 358 GGTTGGTTAAAGGACCGTGTCACAGATAATGGATATTGGAGA-GATATCGGATCGTGTGT 416
Query 417 TAGAGATTCTGGAGTTTGTAAGAAGATACGAAGAGATTTAAATGGTGTTCCTGAAACTCC 476
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
Sbjct 417 TAGAGATTCTGGAGTTTGTAAGAAGATTGGAAGAGATTTAAATGGTGTTCCAGAAACTGC 476
Query 477 TCAGATGTTTTACTTCAGAAAGCTTTCTCCTGTTGAGTCCGGATGTTGCAAGCCGCCAAC 536
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 TCATATGTTTTACTTCAGAAATCTTTCTCCTGTTGAGTCCGGATGTTGCAAGCCGCCAAC 536
Query 537 AGATTGTGGGTATACGTACGTGAATGAGACTGTGTGGATTCCGGGAGGAGAAATGGTGGG 596
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 537 AGATTGTGGCTATACGTACGTGAACGAGACAGTGTGGATTCCGGGAGGAGAAATGGTGGG 596
Query 597 ACCGAACCCGGACTGTATGTTGTGGAACAATGACCAGAGACTACTCTGTTACCAATGCAG 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ACCGAACCCGGACTGTATGTTGTGGAACAATGACCAGAGACTACTCTGTTACCAATGCAG 656
Query 657 CTCTTGTAAAGCTGGTGTTCTTGGTAGCTTGAAAAAGAGTTGGAGAAAAGTATCGGTGAT 716
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 657 CTCTTGTAAAGCCGGTGTTCTTGGTAGCTTGAAAAAGAGTTGGAGAAAAGTCTCGGTGAT 716
Query 717 CAACATTGTGGTCT-TGATCATACTTGTTATCTTCTATGTCATCGCCTATGCAGCTTACC 775
|||||| ||||| | ||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 717 CAACATCGTGGT-TGTGATCATACTTGTTATCTTCTATGTCATCGCGTGTGCGGCTTACC 775
Query 776 GGAATATTAAGAGGAT-TGATAATGACGAACCCGTCGGTGAGGCAAGGATGACCAAATCT 834
|||| |||||||||| | ||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 776 AGAATGTTAAGAGGATGT-ATAATGACGAACCGGTCGGTGAGGCTAGGATGACCAA-TCT 833
Query 835 CATCCTAGTCATTTTCAGATTTAA 858
||||||||||||||||| ||||||
Sbjct 834 CATCCTAGTCATTTTCAAATTTAA 857
> AT3G45600.1 | Symbols: TET3 | tetraspanin3 | chr3:16733755-16735951
REVERSE LENGTH=1173
Length=1173
Score = 708 bits (383), Expect = 0.0
Identities = 707/862 (82%), Gaps = 28/862 (3%)
Strand=Plus/Plus
Query 1 ATGAGATCGAGCAATAACCTTATAGGTCTCGTAAACTTCTTCACTTTCCTCCTTTCGATT 60
|||||| | ||||| | || |||||| | || |||||| ||||||||||||| || ||
Sbjct 98 ATGAGAACAAGCAACCATCTCATAGGTTTAGTCAACTTCCTCACTTTCCTCCTCTCAATA 157
Query 61 CCGATCCTCGGCGGTGGAATATGGCTGAGCAGCAGAGCTAACTCAACCGACTGCCTCAGA 120
|| ||||||||||||||||||||| | |||||| |||||||||| |||||||| | |||
Sbjct 158 CCAATCCTCGGCGGTGGAATATGGTTAAGCAGCCGAGCTAACTCCACCGACTGTTTAAGA 217
Query 121 TTCCTCCAGTGGCCACTCATAATCATCGGAATCTCAATCATGGTCGTATCTTTAGCCGGA 180
||||| || ||||| ||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 218 TTCCTTCAATGGCCTCTCATCGTCATCGGAATCTCAATCATGGTCGTATCTTTAGCTGGA 277
Query 181 ATCGCTGGAGCTTGTTACCAG-AACAAGTTCCTCATGTGGCTTTACCTTTTCGCCATG-T 238
|||||||||||||||||| | ||||||||||| |||||||| ||||| | | |||| |
Sbjct 278 TTCGCTGGAGCTTGTTACC-GTAACAAGTTCCTTATGTGGCTATACCTAGTAGTCATGCT 336
Query 239 TCTTTGTAATCGCTGCTCTTATAGGATTCATCATCTTCGCTTACGCTGTTACTGATAAAG 298
|| | | |||||||||||||| || |||||||||||||||||||| ||||| |||||||
Sbjct 337 TC-TCATCATCGCTGCTCTTATCGGTTTCATCATCTTCGCTTACGCGGTTACAGATAAAG 395
Query 299 GCTCAGGCCGGTTTGTGA-TGAACCGTCGG-TATCTTGATTATTATCTCCATGATTATTC 356
| || || || || | | ||||| || |||||||| |||||||| | ||||| ||
Sbjct 396 GATCCGGTCGAACCGT-ACTTAACCG-GGGTTATCTTGACTATTATCTTGAAGATTACTC 453
Query 357 CGGTTGGTTGAAGGATCGTGTCACGGATAATGGATATTGGAATGAAATTGGATCGTGTGT 416
||||||||||| ||||| || | ||| || | |||||| | ||||| | || ||| |
Sbjct 454 TGGTTGGTTGAAAGATCGAGTTTCTGATGATAGCTATTGGGGTAAAATTAGTTCTTGTCT 513
Query 417 TAGAGATTCTGGAGTTTGTAAG-AAGATACGAAGAGATTTAAATGGTGTTCCTGAAACTC 475
|||||||||||| | |||| || ||||| ||||| |||| |||||||| |||||||||
Sbjct 514 TAGAGATTCTGGTGCTTGT-AGAAAGATTGGAAGAAATTTTAATGGTGTACCTGAAACTG 572
Query 476 CTCAGATGTT-TTACTTCAGAAAG-CTT-TCTCCTGTTGAGTCCGGATGTTGCAAGCCGC 532
|| | ||||| || ||| || ||| ||| | |||||||||||||| ||||||||||| |
Sbjct 573 CTGATATGTTCTTCCTT-AG-AAGACTTAGC-CCTGTTGAGTCCGGTTGTTGCAAGCCAC 629
Query 533 CAACAGATTGTGGGTATACGTACGTGAATGAGA-CTG-TGTGGATTC-CGGGAGGAGAAA 589
|||||||||| || | | | || |||||||||| | | || ||| | || |||||| |
Sbjct 630 CAACAGATTGCGGTTTTTCATATGTGAATGAGACCGGATG-GGA--CACGAGAGGAGGGA 686
Query 590 TGGTGGGACCGAACCCGGACTGTATGTTGTGGAACAATGACCAGAGAC-TACTCTGTTAC 648
|| | |||||||||| |||||||||| |||||| ||| |||||||| | | ||||||||
Sbjct 687 TGATAGGACCGAACCAGGACTGTATGGTGTGGAGCAACGACCAGAG-CATGCTCTGTTAT 745
Query 649 CAATGCAGCTCTTGTAAAGCTGGTGTTCTTGGTAGCTTGAAAAAGAGTTGGAGAAAAGTA 708
|| || || ||||||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 746 CAGTGTAGTTCTTGTAAAGCTGGTGTTCTTGGGAGTTTGAAGAAGAGTTGGAGAAAAGTA 805
Query 709 TCGGTGATCAACATTGTGGT-CTTGATCATACTTGTTATCTTCTATGTCATCGCCTATGC 767
|||||||||||||||||||| ||| ||||| || |||||||| || || ||||| |||||
Sbjct 806 TCGGTGATCAACATTGTGGTACTT-ATCATTCTAGTTATCTTTTACGTTATCGCTTATGC 864
Query 768 AGCTTACCGGAATATTAAGAGGATTGATAATGACGAACCCG-TCGGTGAGGCAAGGATGA 826
|||||| ||||| | |||||||| ||||| || ||||| | | ||||| || |||||||
Sbjct 865 AGCTTATAGGAATGTCAAGAGGATCGATAACGATGAACCGGCT-GGTGAAGCTAGGATGA 923
Query 827 CCAAATCTCATCCTAGTCATTT 848
| ||||| ||||||||||||||
Sbjct 924 CAAAATCACATCCTAGTCATTT 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5