BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg358254 Length=876 Score E Sequences producing significant alignments: (Bits) Value AT5G60440.1 | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306294-... 1131 0.0 > AT5G60440.1 | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306294-24307716 FORWARD LENGTH=1131 Length=1131 Score = 1131 bits (612), Expect = 0.0 Identities = 814/906 (90%), Gaps = 36/906 (4%) Strand=Plus/Plus Query 1 ATGGTgaagaaaagcaaaggtcgtcaaaaaatagagatggtcaaaatgaaaaatgaaagT 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 36 ATGGTGAAAAAAAGCAAAGGTCGTCAAAAAATAGAGATGGTCAAAATGAAAAATGAAAGT 95 Query 61 AACCTCCAAGTTACTTTTTCAAAAAGAAGATCCGGACTTTTCAAGAAGGCTAGTGAGCTT 120 ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 96 AACCTTCAAGTTACTTTTTCAAAAAGAAGATCTGGACTTTTCAAAAAGGCTAGTGAGCTT 155 Query 121 TGCACACTTTGTGGTGCAGAAATCGCCATAGTTGTGTTTTCACCTGGTCGAAAAGTCTTT 180 ||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 156 TGCACACTTTGTGGTGCAGAAGTGGCCATAGTTGTGTTCTCACCTGGTCGAAAAGTCTTT 215 Query 181 TCTTTTGGCCATCCTAATGTTGAATCTGTAATTGATCGATTTTTAAACAATAACCCTCCA 240 |||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||| | Sbjct 216 TCTTTTGGTCATCCAAATGTTGATTCTGTAATTGATCGATTCATAAACAATAACCCTCTA 275 Query 241 CTTTCTCACCAACACAACAACATGCAACTTAGTGAGACTCGTCGAAACTCTATTGTTCAG 300 | | |||||||||||||||||||||||||||| || ||||||||||| || ||||||||| Sbjct 276 CCTCCTCACCAACACAACAACATGCAACTTAGAGAAACTCGTCGAAATTCGATTGTTCAG 335 Query 301 GAGCTGAATAATCATCTTACTCAGGTGTTGAGCCAATTAGAATCGGAGAAAAAGAAGTAT 360 || ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| Sbjct 336 GATCTGAATAATCATCTTACTCAGGTGTTGAGTCAATTAGAAACAGAGAAAAAGAAGTAC 395 Query 361 GATGAGTTAAAGAAAATAAGAGAAAAAACAAGAGCCCTTGGGAATTGGTGGGAAGATCCC 420 || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 396 GACGAGTTAAAGAAAATAAGAGAAAAGACAAAAGCCCTTGGGAATTGGTGGGAAGATCCC 455 Query 421 GTTGAAGAACTTACATTACCTCAACTCGATGGATTCAAAGGTAATCTTGAAAATTTGAAG 480 ||||| |||||| | ||| |||||||||| || ||||||||||||||||||||||||||| Sbjct 456 GTTGAGGAACTTGCGTTATCTCAACTCGAGGGGTTCAAAGGTAATCTTGAAAATTTGAAG 515 Query 481 AAAGTAGTTACAGTCGAAGCCTCCAAATATTTTCAAGCAACTGTTCCAAACTTCTATGTC 540 |||||||||||||||||||| |||| || |||||| |||| |||||||||||||||||| Sbjct 516 AAAGTAGTTACAGTCGAAGCTTCCAGATTTTTTCAGGCAAATGTTCCAAACTTCTATGTG 575 Query 541 GGAAGTTCTAGTAAT---GCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCATGAT 597 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct 576 GGAAGTTCTAGTAATAATGCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCCTGAT 635 Query 598 TTGGACCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCATTCAACTACAACCAGAAC 657 |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 636 ATGGATCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCCTTCAACTACAACCAGAAC 695 Query 658 CAGATTCACCCTAATCCCGCATTACCG---TTTGGAAACAATGCTTATGGTCATATTAAT 714 || ||||||||||||| |||||||| ||||||||||||||||||||| || | ||| Sbjct 696 CAAATTCACCCTAATCATGCATTACCACCCTTTGGAAACAATGCTTATGGT-AT-T-AAT 752 Query 715 GAAGGATTTGTTCCGGACTACAATATGAACTACAGACCAGAGTATATcc-aaa--a---c 768 ||||| |||||||| || |||||| |||||| |||||||||||||| || ||| | | Sbjct 753 GAAGGGTTTGTTCCAGAATACAATGTGAACTTCAGACCAGAGTATAACCCAAACCAAAAC 812 Query 769 caa-t--a---ccaaaaccaa----aa--ccaaa---a---ccTGAGTTTTAAGAGAGAA 810 ||| | | |||||| ||| || ||||| | || |||||||||||||||| Sbjct 813 CAAATCCAAAACCAAAATCAAGTTCAAATCCAAATCCAAAACCAGAGTTTTAAGAGAGAA 872 Query 811 AACATCTCTGAATATGAGCACCATCATCATGGTTATCCTCCCCACTCTAGATCTGATTAC 870 ||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| Sbjct 873 AACATCTCTGAATATGA--AC-ATCATCATGGTTATCCTCCCCAGTCTAGATCTGATTAC 929 Query 871 TATTAA 876 |||||| Sbjct 930 TATTAA 935 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42749259097 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5