BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358254
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60440.1 | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306294-... 1131 0.0
> AT5G60440.1 | Symbols: AGL62 | AGAMOUS-like 62 | chr5:24306294-24307716
FORWARD LENGTH=1131
Length=1131
Score = 1131 bits (612), Expect = 0.0
Identities = 814/906 (90%), Gaps = 36/906 (4%)
Strand=Plus/Plus
Query 1 ATGGTgaagaaaagcaaaggtcgtcaaaaaatagagatggtcaaaatgaaaaatgaaagT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 36 ATGGTGAAAAAAAGCAAAGGTCGTCAAAAAATAGAGATGGTCAAAATGAAAAATGAAAGT 95
Query 61 AACCTCCAAGTTACTTTTTCAAAAAGAAGATCCGGACTTTTCAAGAAGGCTAGTGAGCTT 120
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 96 AACCTTCAAGTTACTTTTTCAAAAAGAAGATCTGGACTTTTCAAAAAGGCTAGTGAGCTT 155
Query 121 TGCACACTTTGTGGTGCAGAAATCGCCATAGTTGTGTTTTCACCTGGTCGAAAAGTCTTT 180
||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 156 TGCACACTTTGTGGTGCAGAAGTGGCCATAGTTGTGTTCTCACCTGGTCGAAAAGTCTTT 215
Query 181 TCTTTTGGCCATCCTAATGTTGAATCTGTAATTGATCGATTTTTAAACAATAACCCTCCA 240
|||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||| |
Sbjct 216 TCTTTTGGTCATCCAAATGTTGATTCTGTAATTGATCGATTCATAAACAATAACCCTCTA 275
Query 241 CTTTCTCACCAACACAACAACATGCAACTTAGTGAGACTCGTCGAAACTCTATTGTTCAG 300
| | |||||||||||||||||||||||||||| || ||||||||||| || |||||||||
Sbjct 276 CCTCCTCACCAACACAACAACATGCAACTTAGAGAAACTCGTCGAAATTCGATTGTTCAG 335
Query 301 GAGCTGAATAATCATCTTACTCAGGTGTTGAGCCAATTAGAATCGGAGAAAAAGAAGTAT 360
|| ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||
Sbjct 336 GATCTGAATAATCATCTTACTCAGGTGTTGAGTCAATTAGAAACAGAGAAAAAGAAGTAC 395
Query 361 GATGAGTTAAAGAAAATAAGAGAAAAAACAAGAGCCCTTGGGAATTGGTGGGAAGATCCC 420
|| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 396 GACGAGTTAAAGAAAATAAGAGAAAAGACAAAAGCCCTTGGGAATTGGTGGGAAGATCCC 455
Query 421 GTTGAAGAACTTACATTACCTCAACTCGATGGATTCAAAGGTAATCTTGAAAATTTGAAG 480
||||| |||||| | ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 456 GTTGAGGAACTTGCGTTATCTCAACTCGAGGGGTTCAAAGGTAATCTTGAAAATTTGAAG 515
Query 481 AAAGTAGTTACAGTCGAAGCCTCCAAATATTTTCAAGCAACTGTTCCAAACTTCTATGTC 540
|||||||||||||||||||| |||| || |||||| |||| ||||||||||||||||||
Sbjct 516 AAAGTAGTTACAGTCGAAGCTTCCAGATTTTTTCAGGCAAATGTTCCAAACTTCTATGTG 575
Query 541 GGAAGTTCTAGTAAT---GCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCATGAT 597
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 576 GGAAGTTCTAGTAATAATGCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCCTGAT 635
Query 598 TTGGACCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCATTCAACTACAACCAGAAC 657
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 636 ATGGATCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCCTTCAACTACAACCAGAAC 695
Query 658 CAGATTCACCCTAATCCCGCATTACCG---TTTGGAAACAATGCTTATGGTCATATTAAT 714
|| ||||||||||||| |||||||| ||||||||||||||||||||| || | |||
Sbjct 696 CAAATTCACCCTAATCATGCATTACCACCCTTTGGAAACAATGCTTATGGT-AT-T-AAT 752
Query 715 GAAGGATTTGTTCCGGACTACAATATGAACTACAGACCAGAGTATATcc-aaa--a---c 768
||||| |||||||| || |||||| |||||| |||||||||||||| || ||| | |
Sbjct 753 GAAGGGTTTGTTCCAGAATACAATGTGAACTTCAGACCAGAGTATAACCCAAACCAAAAC 812
Query 769 caa-t--a---ccaaaaccaa----aa--ccaaa---a---ccTGAGTTTTAAGAGAGAA 810
||| | | |||||| ||| || ||||| | || ||||||||||||||||
Sbjct 813 CAAATCCAAAACCAAAATCAAGTTCAAATCCAAATCCAAAACCAGAGTTTTAAGAGAGAA 872
Query 811 AACATCTCTGAATATGAGCACCATCATCATGGTTATCCTCCCCACTCTAGATCTGATTAC 870
||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 873 AACATCTCTGAATATGA--AC-ATCATCATGGTTATCCTCCCCAGTCTAGATCTGATTAC 929
Query 871 TATTAA 876
||||||
Sbjct 930 TATTAA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5