BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358267
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60590.2 | Symbols: | DHBP synthase RibB-like alpha/beta do... 1356 0.0
> AT5G60590.2 | Symbols: | DHBP synthase RibB-like alpha/beta
domain | chr5:24357025-24358750 FORWARD LENGTH=1215
Length=1215
Score = 1356 bits (734), Expect = 0.0
Identities = 807/843 (96%), Gaps = 2/843 (0%)
Strand=Plus/Plus
Query 1 ATGAATCTCTCCACGAGGCTCGCTGAGAAACTTCCTGGAATCTTACCGGCGCCGTCTTCT 60
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 42 ATGAATCTCTCCACGAGGCTCGCTGAAAAACTTCCCGGAATCTTACCGGCGCCGTCTTCT 101
Query 61 CCTCTTCTACGTAAAGGAATCTCCGAGTTAAGATGCTTTTCAATTGCTAACCACAGTAGA 120
||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 102 CCTCTCCTGCGTAAAGGAGTCTCCGAGTTAAGATGCTTTTCAATTGCTAACCAAAGTAGA 161
Query 121 AGACTGAGATGGGGATTACAAAAGAAGATGGTTTGGAGTTTGGAGAGAGCTGAGACCTGT 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 AGATTGAGATGGGGATTACAAAAGAAGATGGTTTGGAGTTTGGAGAGAGCTGAGACCTGT 221
Query 181 GTAGTTAGCAATTCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCTATT 240
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 GTAGTGAGCAAATCATGTTTAGTTCATCCTGCAACTGAAGCCTATGCACAAGAAGCTATT 281
Query 241 GAAGCTATCAAATCCGAGAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCT 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 GAAGCTATCAAATCCGAAAAAGTTATTGCTGTGCCTACCGATACGCTTTATGGCTTCGCT 341
Query 301 TGTGATGCTTGTTCTTTAGAAGCAGTTAACCGGATATATGAGATCAAAGGGCGTAAACTT 360
||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 342 TGTGATGCTTGTTCTTTAGAAGCGGTTAGCCGGATTTATGAGATCAAAGGGCGTAAACTT 401
Query 361 ACAAGCCCTTTAGCTATCTGCGTTGGTGATGTATTAGATATTAAGAGAGTTGCTACAACT 420
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 402 ACAAGCCCTTTAGCTATCTGCGTTGGTGATGTATTAGATATCAAGAGAGTGGCTACCAC- 460
Query 421 AA-CCACTTACCTCACGGTTTACTTGATTCGCTCTTGCCCGGTCCAGTCACTATTGTACT 479
|| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 461 AAGTCACTTACCTCACGGTTTACTTGATTCGCTCTTGCCCGGTCCAGTCACTCTTGTACT 520
Query 480 TCAACGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCTGGGATTGGTACTATTGG 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 521 TCAACGAGGTGAATCAAGCATTCTTGAAAAGTCCTTGAACCCAGGGATTGGTACTATTGG 580
Query 540 AGTACGGGTTCCAGATTGCGAATTCATTAGAGAAGTATCGAGAGGTTCGGGAAGTGTGTT 599
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 581 AGTACGGGTTCCAGATTGTGAATTCATTAGAGAAGTATCGAGAGGTTCGGGCAGTGTGTT 640
Query 600 GGCTCTTACAAGTGCTAACCTAAGCGGTGATAGAAGCAGCGTTTGTGTTAAAGATTTTGA 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 641 GGCTCTTACAAGTGCTAATTTAAGCGGTGATAGAAGCAGCGTTTGTGTTAAAGATTTTGA 700
Query 660 GAATCTTTGGCAGCATTGTGCTTATGTCTATGATGGTGGTTTGCTTCCATCGGGTCGCGC 719
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 701 GAATCTTTGGCAGCATTGTGCTTATGTCTATGATGGTGGTTTACTTCCATCGGGCCGCGC 760
Query 720 TGGATCTACAATTGTCGATCTGACGAAAGTCGGAAAGTATAAGATCATTAGACCCGGAAG 779
||||||||||| ||||||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 761 AGGATCTACAATAGTCGATCTGACTAAAGTTGGAAAGTACAAGATCATTAGGCCCGGAAG 820
Query 780 CGCGAAGCAAGCAACAGTGGCGATTCTTGAAAAGTATTTGCTGgaagaagaagaagaaga 839
|||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 821 CGCGAAACAAGCAACAGTGGCAATTCTTGAGAAGTATTTGCTGGAAGAAGAAGAAGAAGA 880
Query 840 aga 842
|||
Sbjct 881 AGA 883
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5