BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358290

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits t...   845    0.0  


> AT5G60840.1 | Symbols:  | unknown protein; Has 361 Blast hits 
to 333 proteins in 92 species: Archae - 2; Bacteria - 55; Metazoa 
- 145; Fungi - 36; Plants - 42; Viruses - 19; Other Eukaryotes 
- 62 (source: NCBI BLink). | chr5:24473319-24474491 
REVERSE LENGTH=815
Length=815

 Score =  845 bits (457),  Expect = 0.0
 Identities = 568/621 (91%), Gaps = 10/621 (2%)
 Strand=Plus/Plus

Query  3    GACGAGCGAGAGTGCTACATCTCCGGCGATTCGGCCTCCGCAGGTGGAGCAGCCACCGCC  62
            ||||| |||| || |||||||||||||||||| ||||||||||||||||||  |||| ||
Sbjct  74   GACGACCGAGTGTACTACATCTCCGGCGATTCCGCCTCCGCAGGTGGAGCATTCACCACC  133

Query  63   GCAGGAGATTCCAGTCATCTCTGAACAT-ATTTCCGCCGCTCCTCCCTCTCCG--G-CGG  118
             |||||||  |||| || | |||||| |  ||||| |||||||||||||||||  | || 
Sbjct  134  ACAGGAGAAGCCAGGCAACGCTGAAC-TCTTTTCCCCCGCTCCTCCCTCTCCGCCGCCGC  192

Query  119  CACAAATTACGATGATGGATATTGTGAATAGCAACAGAATTTTAACAGATCAACTGGTTG  178
            || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  193  CAAAAATTACGATGATGGATATTGTGAATAGCAACGGAATTTTAACAGATCAATTGGTTG  252

Query  179  TTGAAGAACCATCCTTTTACAAGTATCTGGATAGCGATGAGTATGCTGAGAAGTATCGAA  238
             |||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  253  ATGAAGACCCATCTTTTTACAAATATCTGGATAGCGAAGAGTATGCTGAGAAGTATCGAA  312

Query  239  GATATGAAGCTGACTTTAGGAAGTATCTCATGGATAAGCACTTCTCTCAAGTGGATGAAT  298
            | || |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct  313  GCTACGAAGCTGATTTTAGAAAGTATCTCATGGATAAGCACTTCTCTGAAGTGGATGAAT  372

Query  299  ATGAGGAGACAACAACAATTGATGGTGAAACCATTTGTTCAAGCGTGTGGCCTTGTGCAC  358
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  373  ATGAGGAGACAACAACAATTGATGGTGAAACCATTTTTTCAAGCGTGTTGCCTTGTGCAC  432

Query  359  GTTGGTATGCAGACCCGGATGCTTCGTTTCTAGACCCGCCACAATGCA---TCgaagaag  415
            ||||||||||||||||||||||||||||| ||||||||||||||||||   | |||||||
Sbjct  433  GTTGGTATGCAGACCCGGATGCTTCGTTTGTAGACCCGCCACAATGCATTGTTGAAGAAG  492

Query  416  aagaag-aagatgaagtagaagaaatggaagaagtagaagaggttgaagaagaagttgaa  474
            |||||| | || |||||||||||||||||||| ||||||||||||||||||||||| || 
Sbjct  493  AAGAAGTAGGA-GAAGTAGAAGAAATGGAAGAGGTAGAAGAGGTTGAAGAAGAAGTAGAT  551

Query  475  gaagtaggagatgtagaagaagaacaagaagaGGTCATTGATTCAGCTTCTGCAGAGATA  534
            ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  552  GAAGTAGGAGAAGTAGAAGAAGAACAAGAAGAGGTCATAGATTCAGCTTCTGCAGAGATA  611

Query  535  CCCAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCAAG  594
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  612  CCAAATGGTGAAATCTCCAATGGAGGTACTGTCTTAGAGGATACTTGTGATGTTGGCGAG  671

Query  595  AAACCAGATATGCCCATTTAG  615
            ||||||||| | |||||||||
Sbjct  672  AAACCAGATTTTCCCATTTAG  692



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29638146730


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5