BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358310
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding prote... 1214 0.0
> AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein
3 | chr5:24560451-24562306 FORWARD LENGTH=1147
Length=1147
Score = 1214 bits (657), Expect = 0.0
Identities = 886/986 (90%), Gaps = 58/986 (6%)
Strand=Plus/Plus
Query 1 ATGGCTTTTTTGAGTAAATTCGGGAACATATTGAAGCAGACCACAAACAAGCAACTCAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 ATGGCTTTTTTGAGTAAATTCGGGAACATATTGAAGCAGACCACAAACAAGCAACTCAAT 123
Query 61 GCTCAGGTTTCTTTAACAAGCCCTTCGCTTTTTCAAGCGATAAGGTGTATGTCATCTTCT 120
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 124 GCTCAGGTTTCTTTATCAAGCCCTTCGCTTTTTCAAGCAATAAGGTGTATGTCATCTTCT 183
Query 121 AAGCTCTTCATTGGAGGCATGGCTTATAGCATGGATGAGGATAGCTTAAGAGAAGCTTTC 180
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AAGCTCTTTATTGGAGGTATGGCTTATAGCATGGATGAGGATAGCTTAAGAGAAGCTTTC 243
Query 181 ACCAAATACGGTGAAGTTGTTGAAACTAGGGTTATTTTGGATCGTGAAACGGGTAGGTCG 240
|||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||
Sbjct 244 ACCAAATACGGTGAAGTTGTCGATACTAGAGTTATTTTGGATCGTGAAACTGGTAGGTCA 303
Query 241 AGGGGATTTGGATTTGTTACATTCACCTCTTCAGAAGCGGCCTCTAGTGCTATCCAGGCT 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 304 AGGGGATTTGGATTTGTTACATTCACCTCTTCAGAAGCGGCATCTAGTGCTATCCAGGCT 363
Query 301 TTGGATGGCCGGGATCTCCATGGCCGGGTCGTTAAAGTAAATTATGCAAATGATAGAACT 360
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 364 TTGGATGGCCGGGATCTCCATGGCCGGGTTGTTAAAGTAAACTATGCAAATGATAGAACA 423
Query 361 Agtggtggcggttttggaggtggtggctacggaggcggtgggggcggttatggtggtggt 420
|||||||| |||||||||||||||||||| ||||||||||| || |||||||||||| ||
Sbjct 424 AGTGGTGGTGGTTTTGGAGGTGGTGGCTATGGAGGCGGTGGTGGTGGTTATGGTGGTAGT 483
Query 421 ggtggctatggaggtggaactgctggcggctatggaggtggtgctggtggctacggaggt 480
|||||||| | | | | ||||||| ||||||||||||||||
Sbjct 484 GGTGGCTA-----------C-G--G------A-GGAGGTG---CTGGTGGCTACGGAGG- 518
Query 481 aatgctggtggtggctatggaggtggtgctggtggctacggaggtaatgctgctggtggc 540
|| | |||||| ||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 519 AA-G-TGGTGG---CTATGGAGGCGGTGCTGGTGGCTACGGAGGTAATTCTGGTGGTGGC 573
Query 541 tACGGAGGTAATgctggtggtggctatgggggcagtggtgctggtggctatggaggc-ag 599
|||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 574 TACGGAGGTAATGCTGCTGGTGGATATGGAGGCAGTGGTGCTGGTGGCTATGGAGGCGA- 632
Query 600 tggtgctggtggctatggaggtgATGCTACTGGTCACGGAGGTGGTAGTGGATATGGTGC 659
|| | ||||| | | ||||||| || ||| |||||| || ||| | | |
Sbjct 633 TGCTACTGGT--C-ACGGAGGTG---CT---GGT---GGAGGT--TA-TGG-T-T----C 671
Query 660 AAGCGGTGGCTTTGGATCTAGCGGCAACACTTATGGTGAGGGTTCCAGTGCAAGTGCAGG 719
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 672 AAGCGGTGGCTTTGGATCTAGCGGCAACACTTATGGGGAGGGTTCAAGTGCAAGCGCAGG 731
Query 720 TGCTGTTGGTGACTATAATGGAAGTAGTGGTTATGGTAGTGCCAATACTTATGGTAGCAG 779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 732 TGCTGTTGGTGACTATAATGGAAGTAGTGGTTATGGTAGCGCCAATACTTATGGTAGCAG 791
Query 780 TAATGGTGGATTCGCTGGAGATAGCCAGTTTGGAGGAAGCCCTGTTGGCAACAGTTCTCA 839
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 792 CAATGGTGGATTCGCTGGAGACAGCCAGTTTGGAGGAAGCCCTGTTGGCAACAGCTCTCA 851
Query 840 GTTCGGTGGTGACAGTACTCAGTTTGCTGCTGGTGGCCAATCTGGCAGTGAGGAACAATT 899
|||||||||||||| ||| |||||| ||||||||||||||| |||| ||||||| |||||
Sbjct 852 GTTCGGTGGTGACAATACCCAGTTTACTGCTGGTGGCCAATTTGGCGGTGAGGATCAATT 911
Query 900 TGGAAGCATGGAGAAAAGTGAAATGAAGATGGA-GAATGGACCAATAGGTGGAGATTTCG 958
||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||
Sbjct 912 TGGAAGCATGGAGAAAAGTGAAACGAAGATGGAAGA-TGGACCAATAGGTGGAGAATTCG 970
Query 959 AAGATGACATTGCCAAAAGAGCTTGA 984
|||||| |||||||||||||||||
Sbjct 971 AAGATG---TTGCCAAAAGAGCTTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5