BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358315

Length=702
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61100.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   566    1e-160


> AT5G61100.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: zinc ion binding (TAIR:AT5G61110.1); Has 1807 Blast 
hits to 1807 proteins in 277 species: Archae - 0; Bacteria 
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; 
Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24579170-24580327 
REVERSE LENGTH=684
Length=684

 Score =  566 bits (306),  Expect = 1e-160
 Identities = 488/565 (86%), Gaps = 56/565 (10%)
 Strand=Plus/Plus

Query  1    ATGGTCTACGAAAGTGGGTACAAGCCTGGATCAGAAAATCCGACATTTACTTCAGATTTA  60
            |||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||
Sbjct  1    ATGGTCTACGAAAGTGGGAACAAGCCTGGACCAGAAAATCCGACATTTAGTTCAGATTTA  60

Query  61   AGCCTTTCAAATTCTCTTGTAAAACTGAAGAAGAAGCCTTGTGAAGTATGCGGAAGTGAT  120
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   AGCCTTTCAGATTCTCTTGTAAAACTGAAGAAGAAGCCTTGTGAAGTATGCGGAAGTGAT  120

Query  121  GCCAATGAGCATTTGATGATGACTTGCTTCATGTGCAGAGATGCTAGAGAGCATACTTAT  180
            |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct  121  GCCAATGAGCTTTTGATGATGACTTGCTTCATGTGCAGAGATACTAGGGAGCATACTTAT  180

Query  181  TGCGCGAGGGTGATGTTACAACGTGTACCTCGTTTGTGGATTTGTGAAGAGTGCCGTGAT  240
            ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct  181  TGCGCGAGGGTGATGTTTCAACGTGTGCCTCGTTTGTGGATTTGTGAAGAGTGCCGTGAT  240

Query  241  TTCTCATCTATCGCCAACAAAACTGCTAATTCTCAAGTGGAAGAAGCTGCTCAACCATCA  300
            ||||||||| |||||||||||||||||||| ||||| |        |     |    |||
Sbjct  241  TTCTCATCTGTCGCCAACAAAACTGCTAATGCTCAA-T--------C-----A----TCA  282

Query  301  AGAACTATTATTCAAGTGGAACAAGTTGTGGTTAAAGAAGTTTGTATTGATCAAACTGTT  360
            |||||||||   |||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  283  AGAACTATT---CAAGTGGAACAAGTTGTGGTTAAACAAGTTCGTATTGATCAAACTGTT  339

Query  361  CCATCATCAACAACTATTCAAGTT--------CC-------TC-T--T---GATCAAACT  399
            |||||| ||| ||||| |||||||        ||       || |  |   |||||||||
Sbjct  340  CCATCACCAAGAACTAATCAAGTTGTGGATAACCACCAAGATCCTCCTATTGATCAAACT  399

Query  400  -ACTCCATCATCAAGAACTATT---GT-G-G-ATAACGAAAATTTGATTGAAGCTGCTGC  452
             | ||||||||| | |||||||   || | | |||| ||||||||||||||||||||| |
Sbjct  400  GA-TCCATCATCGACAACTATTCAAGTTGTGGATAATGAAAATTTGATTGAAGCTGCT-C  457

Query  453  TCCATCATCAAGAAGTAATCAAGTTGCTGATAACAAAGATTGGATTGAAGCTGCTGCTCC  512
             | ||||||||||||||||||||||| |||||||||||||||||||||||||||| | | 
Sbjct  458  -C-ATCATCAAGAAGTAATCAAGTTGTTGATAACAAAGATTGGATTGAAGCTGCT-C-C-  512

Query  513  ATCATTAAGGTCTAATCAAGTTGTG  537
            ||||||||| |||||||||||||||
Sbjct  513  ATCATTAAGATCTAATCAAGTTGTG  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34008517519


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5