BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg358316 Length=495 Score E Sequences producing significant alignments: (Bits) Value AT5G61110.1 | Symbols: | zinc ion binding | chr5:24581078-2458... 425 2e-118 > AT5G61110.1 | Symbols: | zinc ion binding | chr5:24581078-24582130 REVERSE LENGTH=625 Length=625 Score = 425 bits (230), Expect = 2e-118 Identities = 411/491 (84%), Gaps = 41/491 (8%) Strand=Plus/Plus Query 15 TGGATAC-GACGCTGGATCAGAAGCTTCACTACCTTCTTCAGGGTCAGAGATAAGCTTTG 73 ||||| | |||||||||||||| |||||||||||||| | |||||||||||||||| Sbjct 166 TGGAT-CAGACGCTGGATCAGACGCTTCACTACCTTC-T-----TCAGAGATAAGCTTTG 218 Query 74 TCGAGATAACGAAGCCTTGTGAAGTTTGCGGAAGTAATGCCAATGATGATGATGAGATAA 133 ||||| ||| ||||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 219 TCGAGGTAAAGAAGCCTTGTGAAGTTTGCGGAAGTAATGCCAATGATCATGC-GA--TAA 275 Query 134 TGACATGCTTCTTT-TGCAGAAATACACGAGAACATACTTATTGCTCGAGGGTG-ATGAA 191 |||||||||| ||| |||||| ||||||||||||||| ||||||| |||||||| || | Sbjct 276 TGACATGCTT-TTTATGCAGAGATACACGAGAACATATTTATTGCGCGAGGGTGCATCTA 334 Query 192 AGGAGCTGTTCCTCCAATGTGGATATGCGACGAGTGCATTTCCTCAAGATTTAATCAAGT 251 | | ||||||||| |||||||||||| || ||||||| | || | | | || Sbjct 335 CG-ATCTGTTCCTCGAATGTGGATATGTGAAGAGTGCAGAA--TGAA--TCCAGTT--GT 387 Query 252 TGTGAATAACGAAGCTCCTAATGATCAAG---CTGCTGCATCATCA--A-GAAGTACTTA 305 ||||||||||| ||||||| |||||||| |||||||||||||| | ||| |||||| Sbjct 388 TGTGAATAACGTAGCTCCTGTTGATCAAGAAGCTGCTGCATCATCATCAAGAATTACTTA 447 Query 306 TCAAGTTGTTGATAGTGAAGTTGTTCATGATCAGAAC-ATGACTTCTGGCGACTCTGGTA 364 |||||||| |||||||||||||||| | |||||| | |||||||| |||||||||||| Sbjct 448 TCAAGTTGCTGATAGTGAAGTTGTT-A--ATCAGA-CTATGACTTCAAGCGACTCTGGTA 503 Query 365 ATCAAATCTCAGCGACTCATGATCAACTTTCACAAGCACATGCAAGTCCAGTAGCTGAAG 424 |||||||||||||||||||| | |||| | |||| |||||||||||||||||||||| Sbjct 504 ATCAAATCTCAGCGACTCATCAACAACCTCCACAGGCACATGCAAGTCCAGTAGCTG--- 560 Query 425 AAGCTGTGCCAATGGATACATCTTCAGGCGAGAATCAGAAGCCGCCCTCTGATTCGGAAT 484 || |||||||||||||||||| |||| |||||| |||| |||||||||||||||| Sbjct 561 ----TG--CCAATGGATACATCTTCAAGCGATAATCAGCAGCCACCCTCTGATTCGGAAT 614 Query 485 CTGCAATCTAA 495 ||||||||||| Sbjct 615 CTGCAATCTAA 625 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23610049090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5