BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358316

Length=495
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G61110.1 | Symbols:  | zinc ion binding | chr5:24581078-2458...   425    2e-118


> AT5G61110.1 | Symbols:  | zinc ion binding | chr5:24581078-24582130 
REVERSE LENGTH=625
Length=625

 Score =  425 bits (230),  Expect = 2e-118
 Identities = 411/491 (84%), Gaps = 41/491 (8%)
 Strand=Plus/Plus

Query  15   TGGATAC-GACGCTGGATCAGAAGCTTCACTACCTTCTTCAGGGTCAGAGATAAGCTTTG  73
            ||||| | |||||||||||||| |||||||||||||| |     ||||||||||||||||
Sbjct  166  TGGAT-CAGACGCTGGATCAGACGCTTCACTACCTTC-T-----TCAGAGATAAGCTTTG  218

Query  74   TCGAGATAACGAAGCCTTGTGAAGTTTGCGGAAGTAATGCCAATGATGATGATGAGATAA  133
            ||||| ||| ||||||||||||||||||||||||||||||||||||| |||  ||  |||
Sbjct  219  TCGAGGTAAAGAAGCCTTGTGAAGTTTGCGGAAGTAATGCCAATGATCATGC-GA--TAA  275

Query  134  TGACATGCTTCTTT-TGCAGAAATACACGAGAACATACTTATTGCTCGAGGGTG-ATGAA  191
            |||||||||| ||| |||||| ||||||||||||||| ||||||| |||||||| ||  |
Sbjct  276  TGACATGCTT-TTTATGCAGAGATACACGAGAACATATTTATTGCGCGAGGGTGCATCTA  334

Query  192  AGGAGCTGTTCCTCCAATGTGGATATGCGACGAGTGCATTTCCTCAAGATTTAATCAAGT  251
             | | ||||||||| |||||||||||| || |||||||     | ||  |  | |   ||
Sbjct  335  CG-ATCTGTTCCTCGAATGTGGATATGTGAAGAGTGCAGAA--TGAA--TCCAGTT--GT  387

Query  252  TGTGAATAACGAAGCTCCTAATGATCAAG---CTGCTGCATCATCA--A-GAAGTACTTA  305
            ||||||||||| |||||||  ||||||||   ||||||||||||||  | ||| ||||||
Sbjct  388  TGTGAATAACGTAGCTCCTGTTGATCAAGAAGCTGCTGCATCATCATCAAGAATTACTTA  447

Query  306  TCAAGTTGTTGATAGTGAAGTTGTTCATGATCAGAAC-ATGACTTCTGGCGACTCTGGTA  364
            |||||||| |||||||||||||||| |  |||||| | ||||||||  ||||||||||||
Sbjct  448  TCAAGTTGCTGATAGTGAAGTTGTT-A--ATCAGA-CTATGACTTCAAGCGACTCTGGTA  503

Query  365  ATCAAATCTCAGCGACTCATGATCAACTTTCACAAGCACATGCAAGTCCAGTAGCTGAAG  424
            |||||||||||||||||||| | |||| | |||| ||||||||||||||||||||||   
Sbjct  504  ATCAAATCTCAGCGACTCATCAACAACCTCCACAGGCACATGCAAGTCCAGTAGCTG---  560

Query  425  AAGCTGTGCCAATGGATACATCTTCAGGCGAGAATCAGAAGCCGCCCTCTGATTCGGAAT  484
                ||  |||||||||||||||||| |||| |||||| |||| ||||||||||||||||
Sbjct  561  ----TG--CCAATGGATACATCTTCAAGCGATAATCAGCAGCCACCCTCTGATTCGGAAT  614

Query  485  CTGCAATCTAA  495
            |||||||||||
Sbjct  615  CTGCAATCTAA  625



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23610049090


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5