BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358320
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61150.1 | Symbols: VIP4 | leo1-like family protein | chr5:2... 2041 0.0
> AT5G61150.1 | Symbols: VIP4 | leo1-like family protein | chr5:24603656-24607725
REVERSE LENGTH=2265
Length=2265
Score = 2041 bits (1105), Expect = 0.0
Identities = 1255/1324 (95%), Gaps = 23/1324 (2%)
Strand=Plus/Plus
Query 841 CATAGATCGCCAATCGAAGATGAAGAGGGCTCTGAGAAGGATCTGAGACCCGATGATATG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CATAGATCGCCAATCGAAGATGAAGAGGGCTCTGAGAAGGATCTGAGACCCGATGATATG 833
Query 901 GGGCTTGATGATATGCTCCCTGAAGAGGATCCTCAATACGAGTCAGAAGCTGAGCATGTT 960
| |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 834 GTGCTTGATGATATAATCCCTGAAGAAGATCCTCAATACGAGTCAGAAGCTGAACATGTT 893
Query 961 GAAGCTAGGTACAGGGAGAAGCCAGTTGGCCCCCCTTTGGAAGTGGAGGTTCCTTTCCGC 1020
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 894 GAAGCTAGGTACAGGGAGAGGCCAGTTGGTCCCCCTTTGGAAGTGGAGGTTCCTTTCCGC 953
Query 1021 CCTCCTCCAGGTGACCCCGTTAAGATGAACATGATAAAAGTTTCCAATATCATGGGAATT 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 954 CCTCCTCCAGGTGACCCCGTTAAGATGAACATGATAAAAGTTTCCAATATCATGGGGATT 1013
Query 1081 GATCCAAAGCCATTCGATGCCAAAACATTCGTTGAAGAAGACACATTCGTGACAGAAGAA 1140
||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1014 GATCCAAAGCCTTTTGATGCCAAAACATTCGTTGAAGAAGACACATTCATGACAGATGAA 1073
Query 1141 CCTGGAGCAAAGAAGCGTATTCGTTTGGAAAATAATATTGTTCGCCATAGGTTTGTTAAG 1200
|| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1074 CCCGGAGCAAAGAATCGTATCCGTTTGGACAATAATATTGTTCGCCATAGGTTTGTTAAG 1133
Query 1201 AGTCGAGATGGCAAAACATATACTGAAAGTAATGCTCGGTTTGTAAGGTGGTCAGATGGG 1260
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1134 AGTCGAGATGGCAAAACATATAGTGAAAGTAATGCTCGGTTTGTAAGGTGGTCAGATGGA 1193
Query 1261 AGCTTACAGCTATTGATAGGAAACGAAGTTCTTGACATAACTGAACAAGATGCAAAACAA 1320
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1194 AGCTTACAGCTATTGATAGGAAACGAAGTTCTTAACATAACTGAACAAGATGCAAAAGAA 1253
Query 1321 GACCAGAATCACCTCTTTATCAAACATGAAAAGGGTATCCTTCAATCACAAGGAAGAATT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GACCAGAATCACCTCTTTATCAAACATGAAAAGGGTATCCTTCAATCACAAGGAAGAATT 1313
Query 1381 TTGAAGAAAATGAGATTTATCCCATCATCTCTAACGTCAAATTCCCATAGGCTTTTGACT 1440
||||||||||||||||||| ||||||||| || |||||||||||||||||||| ||||||
Sbjct 1314 TTGAAGAAAATGAGATTTACCCCATCATCGCTGACGTCAAATTCCCATAGGCTCTTGACT 1373
Query 1441 GCCCTTGTTGACTCGAGGCAGAAGAAGGCCTTCAAAGTTAAGAACTGTGTCACTGACATT 1500
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 GCCATTGTTGAATCGAGGCAGAAGAAGGCCTTCAAAGTTAAGAACTGTGTCACTGACATT 1433
Query 1501 GACCCTGAGAGGGAGAAGGAGAAGAGAGAAAAGGCGGAAAGCCAAAACCTCAAGGCTAGT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1434 GACCCTGAGAGGGAGAAGGAGAAGAGAGAAAAGGCGGAAAGCCAAAACCTCAAGGCTAGT 1493
Query 1561 ACAAAGCTGAGTCAGGCGAGGGACAAAATCAAGCGCAAGTATTCACTTCCTGTTGAAAGG 1620
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1494 ACAAAGCTGAGTCAGGCGAGGGAGAAAATCAAGCGCAAGTATCCACTTCCTGTTGAAAGG 1553
Query 1621 AGACAACTTTCCACCGGCTACTTGGAAGATGCTCTTGATGAGGATGACGAGACAGACCAC 1680
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1554 AGACAACTTTCCACTGGCTACTTGGAAGATGCTCTTGATGAGGATGACGAG---GA---- 1606
Query 1681 TATGGTTCTCACCGTTCAAACCGTGGCTACGAGGAGGATCTCGAAGCTGAAGCGCAACGG 1740
| | |||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1607 T-T-------ACCGCTCAAACCGTGGCTATGAGGAAGATCTCGAAGCTGAAGCGCAACGG 1658
Query 1741 GAGCGCCGGATTCTGAACGCCAAGAAGAGCCGCAAAGGCATTCCGGGGAGGTCTTCAATG 1800
|| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1659 GAACGCCGGATTCTAAACGCCAAGAAGAGCCACAAAGGCATTCCGGGGAGGTCTTCAATG 1718
Query 1801 ACTTCGGCCAGACCGTCAAGACGTCAAATGGAGTATTCTgagagtgagagagaggaatca 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 ACTTCGGCCAGACCGTCAAGACGTCAAATGGAGTATTCTGAGAGTGAGAGAGAGGAATCA 1778
Query 1861 gaatatgagacggaagaagaagaggaagaaAAGTCACCGCCGCCCCGTGGTagaggaaag 1920
||||||||||||||||||||||||||||||||||||||| |||| |||| || || |||
Sbjct 1779 GAATATGAGACGGAAGAAGAAGAGGAAGAAAAGTCACCG--GCCC-GTGGAAGGGGCAAG 1835
Query 1921 gaatcagaagatgaatatgaggaagatgcagaagaagatgaagatgaaggaggaggaaAA 1980
|| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 1836 GATTCAGAAGATGAATATGAGGAAGATGCAGAAGAAGATGAAGAGGAACGAGGA--AAA- 1892
Query 1981 TCTAACAGATATTCAGATGAAGACGAAGAAGAGGAAGAGGCTGCGGGAG-TAAGGGCAGA 2039
||||||||||| ||||||||||| |||||||||||||||| |||||||| || |||||||
Sbjct 1893 TCTAACAGATACTCAGATGAAGATGAAGAAGAGGAAGAGGTTGCGGGAGGTA-GGGCAGA 1951
Query 2040 GAAGGATCACCGTGGAAGTGGCCGGAAAAGGAAAGGGATTGAGTCTGACGAGGAGGAGTC 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 GAAGGATCACCGTGGAAGTGGCCGGAAAAGGAAAGGGATTGAGTCTGACGAGGAGGAGTC 2011
Query 2100 TCCGCAGAGAAAAGCTCCGACTCATCGTCGTAAGGCCGTGATTGATGACAGTGACGAAGA 2159
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2012 TCCGCCTAGAAAAGCTCCGACTCATCGTCGTAAGGCCGTGATTGATGACAGTGACGAAGA 2071
Query 2160 TTAA 2163
||||
Sbjct 2072 TTAA 2075
Score = 494 bits (267), Expect = 2e-138
Identities = 318/341 (93%), Gaps = 9/341 (3%)
Strand=Plus/Plus
Query 247 GATGAGGCCGAGGGCGGAGTGGAGCCTGAAGGAGAAGGTGAAGCTGAGGTTGAAGTTCAC 306
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 GATGAGGCTGAGGGCGGGGTGGAGCCTGAAGGAGAAGGTGAAGCTGAGGTTGAAGTTCAC 374
Query 307 GGAGAGGCTGAAGTTGAGTCTGACGGGGAACAGGGAGATGTAGAACTTGATCCTGGAGAA 366
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 GGAGAAGCTGAAGCTGAGTCTGACGGGGAACAGGGAGATGTAGAACTTGATCCTGGAGAA 434
Query 367 AGTGAGGGTGAGAGAGAGCAAAGTTCACAGGAGGTTGATGTTGCTGATCCACAAGAGGAA 426
|||||||||||||| ||||||||||||| | | || | ||||||||||||||||||
Sbjct 435 AGTGAGGGTGAGAGGGAGCAAAGTTCAC---A-G--GA-G--GCTGATCCACAAGAGGAA 485
Query 427 AGTGAAGCAAGAGATAGTGATAGTGATAATAAAAAAGAAGAACATGGGGGTAGAGTAGCC 486
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 486 AGTGAAGCAAGAGATAGTGATAGTGATAACAAAGAAGAAGAACATGGGGGTAGAGTAGCC 545
Query 487 AAAAACAGAAGGCAGGATGTTGTTGAGAGTGGATCAGAGAGGTCTGGTGAAAAGCAGTAC 546
||||| || || ||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 546 AAAAAGAGGAGACAGGAGGTTGTTGAGAGCGGATCAGAGAGGTCTGGTGAAAAGCATTAT 605
Query 547 GAGTCTGAAGATGAAGAGGTTGATCAGACTAGGAGTCCAAG 587
|||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GAGTCTGAAGATGAAGAGGTTGATCAGACTAGGAGTCCAAG 646
Score = 193 bits (104), Expect = 8e-48
Identities = 115/120 (96%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 661 TCACCTAGTGAGGAGAAGGAAGAGGCTCAAGTTGCACAGTCAGACGCAAATATTCGTAAT 720
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 648 TCACCTAGTGAGGAGAAGGAAGAGGTTCAAGTTGCACAGTCAGACGTAAATATTCGTAAT 707
Query 721 GTATTT-GGATCTTCGGATGATGAAGATGCAGAAGAATATGTTCGGAATGACGTTGAGCA 779
|| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 708 GT-TTTCGGATCTTCGGATGATGAAGACGCAGAAGAATATGTTCGGAATGACGTTGAGCA 766
Score = 154 bits (83), Expect = 4e-36
Identities = 107/118 (91%), Gaps = 3/118 (3%)
Strand=Plus/Plus
Query 26 AGATGGTTGGAGTAGAAAAGAGATCCGATATTATGCATAATCTGTTCGGAGATAATTCCG 85
|||||||| || ||||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 196 AGATGGTTAAAGGAGAAAAGAGATCCGAGATGATGCTTAATCTGTTCGGAGATAATTCCG 255
Query 86 AGGAAGAAGAGATCGAATCCGAACATGAATCCAATCGTC---AGCCAAACTACGCTTC 140
|||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 256 AGGAAGAAGAGATCGAATCCGAACATGAATGCAATCGTCGTCAGCCTAACTACGCTTC 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107278564665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5