BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358337
Length=1248
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61330.1 | Symbols: | rRNA processing protein-related | chr... 1712 0.0
> AT5G61330.1 | Symbols: | rRNA processing protein-related | chr5:24657148-24661021
REVERSE LENGTH=1584
Length=1584
Score = 1712 bits (927), Expect = 0.0
Identities = 1071/1137 (94%), Gaps = 24/1137 (2%)
Strand=Plus/Plus
Query 133 gatgaagtagatagc-atggaagatgatgagggagagagtgaggaagatgatgaaggaga 191
||||||| ||||| | | |||||||||||| ||||| || ||||||||||||||||||||
Sbjct 312 GATGAAGGAGATACCGA-GGAAGATGATGAAGGAGATAGCGAGGAAGATGATGAAGGAGA 370
Query 192 tAACAAGGAAGACGAGGATGGAGAAAGCGAGGACTTTGAAGATGG-AAT--T-----GA- 242
|||||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 371 GAACAAGGAAGACGAGGATGGAGAAAGCGAGGACTTTGAAGATGGAAATGATAAAGAGAG 430
Query 243 T-A-A------A-GAAGGTAGTGATGACAATAAAGATGCTCAGATGGAAGAGCTTGAGAA 293
| | | | ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGAGAGTGGCGATGAAGGTAATGATGACAATAAAGATGCTCAGATGGAAGAGCTTGAGAA 490
Query 294 AGA-GTACATGGAGCTTCGTTCACAAGAACAGGATATATTGAAGAACTTGAAGCGTGATA 352
||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 491 AGAGGT-CAAGGAGCTTCGTTCACAAGAGCAGGATATATTGAAGAACTTGAAGCGTGATA 549
Query 353 AGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATCAGAAGGCTCTTTGGGATAAAA 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 550 AGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATCAGAAGGCTCTTTGGGATAAGA 609
Query 413 CTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATCGTTCAAACAGATTGCCACAGG 472
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 610 TTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATCGTTCAAACAGATTACCACAGG 669
Query 473 AGCCTGTGAAATCG-TATTTCTGTTCGGAAGATGAGGATGTCTCAACAGCATATACAGAT 531
|||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 670 AGCCTGTGAAATCGTTATTT-TGTTCAGAAGATGAGGATGTCTCAACAGCATATACAGAT 728
Query 532 CTAGTTACTTCATCTAAGAAGACATTAGATTCCCTCTTGGAGTTGCAAGAGGCTTTGTTT 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CTAGTTACTTCATCTAAGAAGACATTAGATTCCCTCTTGGAGTTGCAAGAGGCTTTGTTT 788
Query 592 GAGAAGAACCCCTCGGTTGATCAACAAGTGAATGCAACAGCTAGTGCAGAATCCAAGAAA 651
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 789 GAGAAGAACCCCTCGGTTGATCAACAAGTGAATGCAACAGCTAGTGAAGAATCCAATAAA 848
Query 652 TCAGATGCAGAAGATAGCGATGAATGGCAGCGAATATCTGACTTGCAGAAAAGAATGTCT 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TCAGATGCAGAAGATAGCGATGAATGGCAGCGAATATCTGACTTGCAGAAAAGAATGTCT 908
Query 712 GTCTTCCGAAACAAGGCTGTGGACAAATGGCAGAGAAGAACAGAAGTTACAACTGGTGCA 771
|| |||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct 909 GTGTTCCGAAACAAGGCTGTGGACAAATGGCAGAGAAAAACACAAGTCACAACTGGTGCA 968
Query 772 GCAGCTATTAAAGGAAAGCTCCACGCCTTTAACCAAAACGTTAGTGAACAGGTTGCCTCC 831
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 969 GCTGCTATTAAAGGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCC 1028
Query 832 TACATGAGGGATCCAAGTAGAATGATTAAACAAATGCAACAATCAAGATCTACTGTTGCT 891
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1029 TACATGAGGGATCCAAGTAGAATGATTAAACAGATGCAACAATCAAGATCTACTGTTGCT 1088
Query 892 GTTTTTGGAACTGTCCCTCAGGAGGCCATAGAACCAATTTCAGAGGAAAAACAACAAGAA 951
||||||||||||||||||||||| ||||| ||||||| | |||||||||||||| |||||
Sbjct 1089 GTTTTTGGAACTGTCCCTCAGGAAGCCATGGAACCAAATCCAGAGGAAAAACAAGAAGAA 1148
Query 952 GGAGACCCTGAACTTATGGAAGATGCTGAGTTCTATAGGCAGTTACTAAAGGAGTTTCTT 1011
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTACTAAAGGAGTTTCTC 1208
Query 1012 GAGACCATCGATCCAGCTTCCTCGGAGGCGGCTTTCTACGAGATGAAGAAGTTTCAGACG 1071
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1209 GAGACTATCGATCCAGCTTCCTCAGAGGCGGCTTTCTACGAGATGAAGAAGTTCCAGACG 1268
Query 1072 AAGAAGAGGAAAATTGTGGATCGACGTGCCTCCAAGAGCAGAAAGATCAGGTATAATGTT 1131
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1269 AAGAAGAGGAAAGTTGTGGATCGACGTGCCTCAAAGAGCAGAAAGATCAGGTATAATGTT 1328
Query 1132 CATGAGAAGATTGTCAACTTCATGGCTCCACGGCCAGCAAAGATACCTCCAAACACTGCG 1191
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 1329 CATGAGAAGATTGTCAACTTTATGGCTCCACGACCAGCGAAGATTCCTCCAAACACGGCG 1388
Query 1192 GATTTGCTCAAGAATCTCTTCGGTCTCAAGACCAGAAACGTTCAGTCTGAAGCGTAA 1248
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1389 GATTTGCTTAAGAATCTCTTCGGTCTCAAGACCAGAAACGTTCAGTCTGAAGCTTAA 1445
Score = 327 bits (177), Expect = 1e-88
Identities = 209/224 (93%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGGGGGATCAAAGAAGACTAAAAGAGCAAGACTTAATGACAGTGAATCGGAAGAC 60
||||||||||| ||||||| | ||||||||||||||| | |||||||||||||||||||
Sbjct 135 ATGGCTGGGGGGTCAAAGAGGTCTAAAAGAGCAAGAC-T--TGACAGTGAATCGGAAGAC 191
Query 61 ATAAGCGACCAAGAAAACCTTAAGGTCGAAAGCGACAatgaagatgatgaattacctgat 120
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 192 ATAAGCGACCAAGAAAACCTTAAGGCCGAAAGCGACAATGAAGATGATCAATTACCTGAT 251
Query 121 gggatagaggatgatgaagtagatagcatggaagatgatgagggagagagtgaggaagat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 GGGATAGAGGATGATGAAGTAGATAGCATGGAAGATGATGAGGGAGAGAGTGAGGAAGAC 311
Query 181 gatgaaggagatAACAAGGAAGACGAGGATGGAGAAAGCGAGGA 224
||||||||||||| | ||||||| || || ||||| ||||||||
Sbjct 312 GATGAAGGAGATACCGAGGAAGATGATGAAGGAGATAGCGAGGA 355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61345065990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5