BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358371
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61680.1 | Symbols: | Pectin lyase-like superfamily protein... 1712 0.0
> AT5G61680.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:24786416-24788015 REVERSE LENGTH=1017
Length=1017
Score = 1712 bits (927), Expect = 0.0
Identities = 987/1017 (97%), Gaps = 0/1017 (0%)
Strand=Plus/Plus
Query 1 ATGGGATACAATTATGTGTCCCTCATAGTAACAATCCTGCTCGTGGTGATTACATCGCCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGATACAATTATGTGTCCCTCATAGTAACAATCCTGCTCGTGGTGATTACATCGCCC 60
Query 61 GTGGTTTTCGGTAACGATGCAGCACCAATTCCGGAGAACAAAGGCCGAATCGAGCAGTGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGTTTTCGGTAACGATGCAGCACCAATTCCGGAGAACAAAGGCCGAATCGAGCAGTGG 120
Query 121 TTCAACACCAACGTGAAACAAAATGGAAGAGGCCATTTCAAGACAATAACCGAAGCAATA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCAACACCAACGTGAAACAAAATGGAAGAGGCCATTTCAAGACAATAACCGAAGCGATA 180
Query 181 AACAGTGTACGGGCAGGGAACACTAGGCGTGTGATAATCAAGATAGGTCCTGGTGTATAC 240
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AATAGTGTACGGGCAGGGAACACTAGGCGTGTGATCATCAAGATAGGTCCTGGTGTATAC 240
Query 241 AAAGAGAAGGTCACGATAGATAGAAACAAGCCCTTCATCACACTTTATGGTCATCCAAAT 300
||||||||||||||||||||||||| |||||| ||||||||||| || ||||||||||||
Sbjct 241 AAAGAGAAGGTCACGATAGATAGAAGCAAGCCATTCATCACACTGTACGGTCATCCAAAT 300
Query 301 GCAATGCCCGTATTGACATTCGATGGTACCGCAGCACAATATGGGACAGTTGATAGCGCA 360
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 301 GCAATGCCGGTATTGACATTCGACGGTACCGCAGCACAATATGGGACAGTCGATAGCGCA 360
Query 361 ACTCTCATTGTCTTGTCAGACTATTTCATGGCTGTTAACATCATCGTTAAGAATTCTGCC 420
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 361 ACTCTCATTGTCTTGTCCGACTATTTCATGGCTGTTAACATCATCCTTAAGAATTCTGCG 420
Query 421 CCTATGCCGGATGGTAAGAGGAAGGGAGCACAAGCTTTATCTATGAGAATCTCTGGCAAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTATGCCGGATGGTAAGAGGAAGGGAGCACAAGCTTTATCTATGAGAATCTCTGGCAAC 480
Query 481 AAAGCAGCTTTCTACAACTGTAAATTTTACGGTTATCAAGACACGATTTGTGATGACACC 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 481 AAAGCAGCTTTCTACAACTGTAAATTTTACGGTTATCAAGACACGATTTGCGATGACACC 540
Query 541 GGAAACCATTTCTTCAAAGACTGCTACATCGAAGGCACATTTGATTTCATCTTTGGAAGT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGAAACCATTTCTTCAAAGACTGCTACATCGAAGGCACATTTGATTTCATCTTTGGAAGC 600
Query 601 GGACGCTCTCTATACCTCGGTACACAACTAAACGTTGTGGGAGATGGAATCAGAGTGATC 660
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GGACGCTCTCTGTACCTCGGTACACAACTAAACGTTGTGGGAGATGGAATCAGAGTGATC 660
Query 661 ACAGCTCATGCGGGAAAAAGCGCAGCAGAGAAAAGTGGATACTCATTCGTGCACTGCAAG 720
||||||||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||
Sbjct 661 ACAGCTCATGCGGGAAAAAGCGCTGCAGAGAAAAGCGGATACTCGTTCGTCCACTGCAAG 720
Query 721 GTTACAGGGACTGGAACCGGGATCTACTTGGGTCGAGCATGGATGAGCCACCCAAAGGTT 780
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 721 GTTACAGGGACTGGAACCGGGATCTACTTGGGTCGATCATGGATGAGCCACCCCAAGGTT 780
Query 781 GTTTATGCATACACTGATATGTCAAGTGTCGTGAACCCATCCGGATGGCAAGAAAATCGC 840
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 781 GTTTATGCATACACGGATATGTCAAGTGTTGTGAACCCATCTGGATGGCAAGAAAACCGC 840
Query 841 GAGGCCGGACGTGACAAGACGGTGTTCTATGGAGAATATAAGTGCACAGGAACAGGATCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAGGCCGGACGTGACAAGACGGTGTTCTATGGAGAATATAAGTGCACAGGAACAGGATCG 900
Query 901 CACAAGGAGAAGAGAGTGAAGTATACACAAGACATTGACGACGTAGAAGCTAAGTACTTC 960
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 901 CACAAGGAGAAGAGAGTAAAGTATACACAAGACATTGATGACATAGAAGCTAAGTACTTC 960
Query 961 ATCTCGCTTGGCTACATCCAAGGATCTAGCTGGCTCCTGCCTCCTCCCTCTTTCTAA 1017
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 961 ATCTCGCTTGGCTACATCCAAGGATCTAGCTGGCTCCTGCCTCCTCCTTCTTTCTAA 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5