BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358375
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61730.1 | Symbols: ATATH11, ATH11 | ABC2 homolog 11 | chr5:... 817 0.0
AT5G61690.1 | Symbols: ATATH15, ATH15 | ABC2 homolog 15 | chr5:... 418 3e-116
> AT5G61730.1 | Symbols: ATATH11, ATH11 | ABC2 homolog 11 | chr5:24803583-24807898
REVERSE LENGTH=2823
Length=2823
Score = 817 bits (442), Expect = 0.0
Identities = 480/499 (96%), Gaps = 0/499 (0%)
Strand=Plus/Plus
Query 9 TCTAAAAGTTGAGCCGACAGAAGAAAGCAAAGCTTTCATGACTTTTGTTATCCCACACGA 68
||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2325 TCTAAAAGTTGAGCCAACAGAAGAAAACAAAGCTTTCATGACTTTTGTAATCCCACACGA 2384
Query 69 CAAAGAGCAACTTTTGACGGGGTTTTTCGGGGAGCTACAAGATAGAGAATCTGAATTTGG 128
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2385 CAAAGAGCAACTTTTGAAGGGGTTTTTCGCGGAGCTACAAGATAGAGAATCTGAATTTGG 2444
Query 129 CATCTCAGACATTCAGCTCGGTCTTGCCACTCTTGAAGAAGTGTTTTTGAACATAGCTAG 188
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2445 TATCGCAGACATTCAGCTCGGTCTTGCCACTCTTGAAGAAGTGTTTTTGAACATCGCTAG 2504
Query 189 ACGTGCTGAACTAGAAAGCGCAACTGTTGAAGGAACCATGGTCACTCTCGAGTTAGAATC 248
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2505 ACGTGCTGAACTAGAAAGCGCAACTGTTGAAGGAACTATGGTAACTCTCGAGTTAGAATC 2564
Query 249 AGGCATCGCAGTCGAGATACCTGTGGGAGCAAGATTTGTAGGTATCCCTGGAACAGAAAA 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2565 AGGCATCGCAGTCGAGATACCTGTGGGAGCAAGATTTGTAGGTATCCCTGGAACAGAAAA 2624
Query 309 CGCAGAGAATCCAAGAGGAATAATGGTGGAAGTGTATTGGCAACAAGACGGGTCAGGATC 368
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2625 CGCAGAGAATCCAAGAGGACTAATGGTGGAAGTGTACTGGCAACAAGACGGGTCAGGATC 2684
Query 369 GATGTGCATCTCTGGACACTCGCCGGAGATGCGGATACCAGAGAATGTCTCAGTGATATA 428
||||||||| |||||||||||| ||||||||||||| ||||||||||| || ||||||||
Sbjct 2685 GATGTGCATTTCTGGACACTCGGCGGAGATGCGGATCCCAGAGAATGTATCGGTGATATA 2744
Query 429 TGAACCATCATCACAAGTATTAGGACATGGGCAGCGACGAGTTCGGGGAATTGTGATTGA 488
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 2745 TGAACCATCATCACAAGTATTAGGACATGGACAGCGACGAGTTCGGGGTATTGTGATTGA 2804
Query 489 TTATGAATCTAACAATTAA 507
|||||||||||||||||||
Sbjct 2805 TTATGAATCTAACAATTAA 2823
> AT5G61690.1 | Symbols: ATATH15, ATH15 | ABC2 homolog 15 | chr5:24789495-24793487
REVERSE LENGTH=2760
Length=2760
Score = 418 bits (226), Expect = 3e-116
Identities = 383/455 (84%), Gaps = 25/455 (5%)
Strand=Plus/Plus
Query 7 CATCTAAAAGTTGAGCCGACAGAAGAAAGCAAAGCTTTCATGACTTTTGTTATCCCACAC 66
||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 2281 CATCTGAAAGTTGAGCCAACAGAAGAAAACAAAGCTTTCATGACTTTTGTTATCCCACAC 2340
Query 67 GACAAAGAGCAA-CTTTTGACGGGGTTTTTCGGGGAGCTACAAGATAGAGAATCTGAATT 125
|||||||| || ||||||||| | | | | || | ||||||||||||||
Sbjct 2341 GACAAAGAA-AATCTTTTGACGC--T---------A-C-A-AA-ACAGAGAATCTGAATT 2384
Query 126 TGGCATCTCAGACATTCAGCTCGGTCTTGCCACTCTTGAAGAAGTGTTTTTGAACATAGC 185
||| ||||| ||||| || || ||||| || |||||||||||||||||| | ||||| ||
Sbjct 2385 TGGAATCTCGGACATCCAACTTGGTCTAGCGACTCTTGAAGAAGTGTTTCTCAACATCGC 2444
Query 186 TAGAC-GTGCTGAACTAGAAAGCGCAACTGTTGAAGGAACCATGGTCACTCTCGAGTTAG 244
|||| | |||||||||||||||||||| | |||||||| |||||||||| | |||||||
Sbjct 2445 AAGACAG-GCTGAACTAGAAAGCGCAACAGCTGAAGGAAACATGGTCACTTTGGAGTTAG 2503
Query 245 AATCAGGCATCGCAGTCGAGATACCTGTGGGAGCAAGATTTGTAGGTATCCCTGGA-ACA 303
|||||||||| || | |||||||||||||||||||||||||| || ||||||| | |||
Sbjct 2504 CATCAGGCATCTCACTAGAGATACCTGTGGGAGCAAGATTTGTTGGGATCCCTG-ATACA 2562
Query 304 GAAAACGCAGAGAATCCAAGAGGAATAATGGTGGAAGTGTATTGGCAACAAGACGGGTCA 363
|||||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||
Sbjct 2563 GAAAACGCAGAGAATCCAAGTGGAGTAATGGTGGAAGTGTACTGGCAACAAGACGGCTCG 2622
Query 364 GGATCGATGTGCATCTCTGGACACTCGCCGGAGATGCGGATACCAGAGAATGTCTCAG-T 422
|| ||||||||||||||||||||||| | ||||||||| ||||| ||||||| || | |
Sbjct 2623 GGGTCGATGTGCATCTCTGGACACTCATCAGAGATGCGGGTACCACAGAATGT-TCCGGT 2681
Query 423 GATATATGAACCATCATCACAA-GTATTAGGACAT 456
|| | | ||||||| || || | ||||||||||
Sbjct 2682 GACACGTCCACCATCACCA-AATGCATTAGGACAT 2715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5