BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358424
Length=2316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62270.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1807 0.0
AT5G62260.1 | Symbols: | AT hook motif DNA-binding family prot... 1801 0.0
> AT5G62270.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: mucin-related (TAIR:AT2G02880.1). | chr5:25011979-25014578
FORWARD LENGTH=1493
Length=1493
Score = 1807 bits (978), Expect = 0.0
Identities = 1074/1122 (96%), Gaps = 0/1122 (0%)
Strand=Plus/Plus
Query 1195 GGATCTGATGGAGTTGGAGGCGATGATAATGGTTGGGATATTTCAACAGGAGGATCATTT 1254
||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 280 GGATCTGATGGAGTTGGAGGCGATGATAACGGCTGGAATATTTCAACAGGAGGATCATTT 339
Query 1255 GGTGGTACAGGATCTGATGATCTTGATTGGGATAACAAATCTATGTGGTCGACTGGTTTA 1314
|||||||||||||||| ||||||||||||||| || |||||||||||||| |||||||||
Sbjct 340 GGTGGTACAGGATCTGCTGATCTTGATTGGGACAATAAATCTATGTGGTCTACTGGTTTA 399
Query 1315 ACCAAGGAGCATTTTGATGGTGTCTCTGTTGGTCGTCAGAAGAACGCGGCGAATCCTTCT 1374
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 400 ACTAAGGAGCATTTCGATGGTGTCTCCGTTGGTCGTCAGAAGAACGCGGCGAATCCTTCT 459
Query 1375 TCTGATAACACCGCTTCTGATTCGGGTGATGTGATGAGCAAGTTGGGTCCAAAGGAAGTT 1434
|||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 460 TCTGATAACACCCCTTCTGATTCGGGTGATGTAATGAGCAAATTGGGTCCAAAGGAGGTA 519
Query 1435 GCTTTGGTTAATGAAATGAACGAGTATGATGATATGCTTAAAGAGATTGAGCAAGATAAT 1494
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 520 GCTTTGGTTAATGAAATGAATGAGTATGATGATTTGCTTAAAGAGATTGAGCAAGATAAT 579
Query 1495 AGGCAAGGCAGAGCTTTTGTTGATGGGATTAAACAGAGAATGATGGAGATCAGTGTGTTG 1554
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 AGGCAAGGCAGGGCTTTTGTTGATGGGATTAAACAGAGAATGATGGAGATCAGTGTGTTG 639
Query 1555 TTGAAGCAAGTGAAAGAGCCTGGTGCTAGAGGGTCTTATCTTAAGGACTCTGAGAAGACT 1614
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 640 TTGAAGCAAGTTAAAGAGCCAGGTGCTAGAGGGTCTTATCTTAAGGACTCTGAGAAGACT 699
Query 1615 GAGATGTATAGATTGCACAAAGAGAATCCTGAGGTGTATACGGTTGAGAGGCTTGCTAAG 1674
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 700 GAGATGTATAGATTGCACAAAGAGAATCCTGAGGTGTATACTATTGAGAGGCTTGCTAAG 759
Query 1675 GATTATAGGATTATGAGGCAGCGTGTTCACGCCATTCTTTTTCTTAAAGAAGATGAAGAA 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 GATTATAGGATTATGAGGCAGCGTGTTCACGCCATTCTTTTTCTTAAAGAAGATGAAGAA 819
Query 1735 GAAGAGGAGAGGAAGCTTGGTCGTCCCTTGGATGATTCTGTTGAGCGTTTGCTTGATGAG 1794
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 820 GAAGAGGAGAGGAAGCTTGGTCGTCCTTTGGATGATTCTGTTGACCGTTTGCTTGATGAG 879
Query 1795 TACCCTGAGTTCTTCATTTCGCATGACCGGGAATTTCATGTGGCCTCACTTAATTACAAA 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TACCCTGAGTTCTTCATTTCGCATGACCGGGAATTTCATGTGGCCTCACTTAATTACAAA 939
Query 1855 CCCGACTTCAAGGTCATGCCAGAAGGATGGGATGGTACAATCAAAGATATGGATGAAGTC 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 CCCGACTTCAAGGTCATGCCAGAAGGATGGGATGGTACAATCAAAGATATGGATGAAGTC 999
Query 1915 CATTATGAGATCTCAAAGAAAGAGGATGACATGCTTTACGAAGAATTTGTCCGAAAGTTT 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1000 CATTATGAGATCTCAAAGAAAGAGGATGACATGCTTTACGAAGAATTTGTCCGAAGGTTT 1059
Query 1975 GAGTTCAACAAAATGAAATGGAGAGGAGAAGTGAAGTGCCACAAGTACAGTAGGAGGCGT 2034
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||
Sbjct 1060 GAGTTCAACAAAATGAAATGGAGAGGAGAAGTGATGTGCCACAAGTACAGCAGGAGACGT 1119
Query 2035 TCATCAGACGGATGGAAAATCACGGTTGAGAAATTGGGTGCTCAGGGAAAACGTGGAGCC 2094
|||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 1120 TCATCAGAGGGATGGAAAATCACGGTTGAGAAATTGGGTGCTAAGGGCAAACGTGGAGCC 1179
Query 2095 GGAGGTGGCTGGAAATTTGTGAGTCTTCCAGATGGATCAAGCCGACCACTCAACGAAGTG 2154
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1180 GGAGGTGGCTGGAAGTTTATGAGTCTTCCAGATGGATCAAGCCGACCACTCAACGAAATG 1239
Query 2155 GAGAAGATCTATGTTAAGCGTGAAACCCCGCTTCGTCGCCGAAGCATGGTATCGACGGAG 2214
|||||| |||||||||||||||||||||| || |||||||||||||| |||| ||||||
Sbjct 1240 GAGAAGGTCTATGTTAAGCGTGAAACCCCACTACGTCGCCGAAGCATTATATCAACGGAG 1299
Query 2215 ATGATGCGTTACTCGCCCGGGAACCAGAAGCGGAGGTCGAAGCGGAAACAGAAGCGGAAG 2274
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GTGATGCGTTACTCGCCCGCGAACCAGAAGCGGAGGTCGAAGCGGAAACAGAAGCGGAAG 1359
Query 2275 GAGAGGCGCGTTGAATGTCTGAAAGCTGGCAAGCAAACGTGA 2316
||||||||| | | |||||| ||||| || ||||||||||||
Sbjct 1360 GAGAGGCGCATAGCATGTCTCAAAGCCGGTAAGCAAACGTGA 1401
> AT5G62260.1 | Symbols: | AT hook motif DNA-binding family protein
| chr5:25009027-25011588 FORWARD LENGTH=1577
Length=1577
Score = 1801 bits (975), Expect = 0.0
Identities = 1135/1211 (94%), Gaps = 15/1211 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAGAAGGGTGGAATAAGTCCAAGTGGGGTCGTCACAGTTAAGGAAGATGAAGCT 60
||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 123 ATGGAGGAGAAAGGTGAAATAAGTCCAAGTGGGGTCGTCACAGTTAAGGGAGATGAAGCT 182
Query 61 TTGGTTCCAAGAACAGAGTTTCAACAAAACCCTAGCTTTCTCCAATTCGTGAGTCCCACG 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 183 TTGGTTCCAAGAACAGAGTTTCAACAAAACCCTAGTTTTCTCCAATTCGTGAGTCCCACA 242
Query 121 ACGGTAGTGTCTCCTCTGCCTCTTCCACCAGCTCCGTCTCCGGCTCCGGTACCAGCCACC 180
||||||||| ||||||| |||| |||||||||||||||| |||||||||||||| |||||
Sbjct 243 ACGGTAGTGACTCCTCTCCCTCCTCCACCAGCTCCGTCTTCGGCTCCGGTACCAACCACC 302
Query 181 GTGACTCCTGACTCAGCCGCAGCATCGACCGGATCAGATCCGACGAAGAAGAAGAGAGGA 240
|||||||||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 303 GTGACTCCTGGCTCAGCCACAGCATCAACCGGATCAGATCCGACGAAAAAGAAGAGAGGA 362
Query 241 AGACCGAGGAAGTACGCACCAGATGGAAGCCTGAACCCTAGGTTTTCGAGACCAACTCTG 300
||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||
Sbjct 363 AGACCGAGGAAGTACGCACCAGACGGAAGCCTGAACCCTAGGTTTTTGCGACCAACTCTG 422
Query 301 TCTCCAACTCCAATCTCATCTTCGATTCCATTGTCTGGAGATTATCAATGGAAACGAGGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 TCTCCAACTCCAATCTCATCTTCGATTCCATTGTCTGGAGATTATCAATGGAAACGAGGC 482
Query 361 AAAGCTCAGCAGCAGCATCAGCCTCTTGAATTCGTCAAGAAATCTCACAAATTTGAGTAT 420
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 483 AAAGCTCAGCAGCAGCATCAGCCTCTTGAGTTCGTCAAGAAATCTCACAAATTCGAGTAT 542
Query 421 GGAAGTCCAGCTCCTACTCCTCCTCCTCCTGGGCTCTCATGTTACGTGGGTGCAAATTTT 480
||||| ||||||||||||||||||| ||||||||||||||| || |||||||||||||||
Sbjct 543 GGAAGCCCAGCTCCTACTCCTCCTCTTCCTGGGCTCTCATGCTATGTGGGTGCAAATTTT 602
Query 481 ACAACCCATCAATTTACTGTCAATGCCGGTGAGGATGTAACAATGAAGGTTATGCCGTAT 540
|| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 603 ACGACCCATCAATTTACTGTCAATGGCGGTGAGGATGTGACAATGAAGGTTATGCCGTAT 662
Query 541 TCGCAACAAGGATCTCGAGCTATCTGCATTCTTTCTGCAACTGGTTCGATCTCTAATGTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TCGCAACAAGGATCTCGAGCTATCTGCATTCTTTCTGCAACTGGTTCGATCTCTAATGTC 722
Query 601 ACTCTTGGTCAGCCTACCAATGCAGGTGGCACTCTTACATATGAGGGTCGATTTGAGATA 660
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 723 ACTCTTGGTCAACCTACCAATGCAGGTGGCACTCTTACATATGAGGGTCGGTTTGAGATA 782
Query 661 CTATCGCTATCTGGTTCCTTTATGCCTACTGAGAATGGAGGAACAAAAGGTCGGACTGGT 720
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 783 CTATCGCTATCTGGTTCCTTTATGCCTACTGAAAATGGAGGAACAAAAGGTCGGGCTGGT 842
Query 721 GGGATGAGCATTTCTTTAGCTGGACCAAATGGCAAAATCTTCGGTGGTGGCCTTGCCGGT 780
|||||||||||||||||||| |||||||||||||| || || ||||||||||||||||||
Sbjct 843 GGGATGAGCATTTCTTTAGCCGGACCAAATGGCAATATATTTGGTGGTGGCCTTGCCGGT 902
Query 781 ATGCTTATAGCAGCCGGTCCTGTTCAGGTGGTAATGGGAAGTTTCATTGTGATGCATCAA 840
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 ATGCTTATAGCAGCTGGTCCTGTTCAGGTGGTAATGGGAAGTTTCATTGTGATGCATCAA 962
Query 841 GCAGAACAAAATCAGAAGAAGAAACCGCGAGTTATGGAAGCTTTTGCTCCACCACCGCAA 900
|||||||||||||||||||||||||| |||||||||| |||||||||||||||| | |
Sbjct 963 GCAGAACAAAATCAGAAGAAGAAACCTAGAGTTATGGAGGCTTTTGCTCCACCACAACCA 1022
Query 901 CAA-C-C-ACCACAACTGCAACAACAACAACCTCCTACTTTCACCATAACCACTGTGAAT 957
||| | | ||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1023 CAAGCACCACCACAACTGCAACAACAACAACCTCCTACTTTTACCATAACAACCGTGAAT 1082
Query 958 TCAACTTCTCCAGCG---A-C-C-GTAGAGGAGCCGAAACAACAACCCTACGGTGGTGGT 1011
||||||||||| || | | | |||||||||| ||||| |||| | || |||||||||
Sbjct 1083 TCAACTTCTCCTTCGGTGAACACCGTAGAGGAGCAGAAACCACAAGCTTATGGTGGTGGT 1142
Query 1012 ATAGTGAGACCGATGGCTCAAATGTCTTCTTCTTTCCAAAACGAGAATTCAACTATGAAC 1071
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1143 ATAGTGAGACCGATGGCTCAAATGCCTTCTTCTTTCCAAAACGACAATTCAACTATGAAC 1202
Query 1072 AATTTCACACCGCCCTATCACGGATACGGGAATATGAACACGGGCACTA---ACAAAGAC 1128
|||||||||||| ||||||| |||||||||||||||||||| || |||| |||||||
Sbjct 1203 AATTTCACACCGGCCTATCATGGATACGGGAATATGAACACTGGTACTACTCACAAAGAA 1262
Query 1129 GAACATGAAGACGACGATGGTGGTGA--A-GATGATGATTCGGGCGATACTAGGAGCCAA 1185
|||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 1263 GAACATGAAGACGAAGATGGTGGTGATGATGATGATGATTCAGGCGATACTAGGAGCCAA 1322
Query 1186 TCTCTTAGTGG 1196
|||| ||||||
Sbjct 1323 TCTCATAGTGG 1333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114959248050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5