BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358442

Length=360
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structura...  69.4    2e-11


> AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural 
maintenance of chromosomes 2 | chr5:25056262-25062625 FORWARD 
LENGTH=3763
Length=3763

 Score = 69.4 bits (37),  Expect = 2e-11
 Identities = 39/40 (98%), Gaps = 0/40 (0%)
 Strand=Plus/Plus

Query  315   GACTAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACA  354
             ||| ||||||||||||||||||||||||||||||||||||
Sbjct  3514  GACAAAGTTCGTTGATGGAGTTTCAACAGTCCAAAGGACA  3553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16889963664


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5