BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358443
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62420.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1544 0.0
> AT5G62420.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr5:25064835-25066111 FORWARD LENGTH=951
Length=951
Score = 1544 bits (836), Expect = 0.0
Identities = 912/950 (96%), Gaps = 0/950 (0%)
Strand=Plus/Plus
Query 1 ATGAGGAGTGACGTGGCACGTCTCAGGTGTGGGAAGACGATTCCATTGCTTGGAATGGGA 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGAGGAGTGACGTGGCACGTCTCAGGTGTGGGGAGACGATTCCATTGCTTGGAATGGGA 60
Query 61 ACTTATTGTCCTCAAAAAGATCGAGAGACCACCATCTCAGCCGTCCATCAAGCTATCAAG 120
|||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||
Sbjct 61 ACTTATTGTCCTCAAAAAGATCGAGAGAGCACCATATCAGCCGTCCATCAAGCTATTAAG 120
Query 121 ATAGGGTATAGACATTTTGACACAGCAAAGATATATGGATCAGAAGAAGCTCTTGGAACT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAGGGTACAGACATTTTGACACAGCAAAGATATATGGATCAGAAGAAGCTCTTGGAACT 180
Query 181 GCATTGGGACAAGCTATCTCCTATGGGACTGTCCAAAGAGATGATCTCTTTGTCACTTCC 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 181 GCATTGGGACAAGCTATCTCCTATGGGACTGTCCAAAGAGATGATCTTTTTGTCACTTCA 240
Query 241 AAGTTATGGTCTAGTGATCACCATGACCCTATCTCTGCCCTCATACAAACTCTCAAGACA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGTTATGGTCTAGTGATCACCATGACCCTATCTCTGCCCTCATACAAACTCTCAAGACA 300
Query 301 ATGGGCCTAGAGTATCTAGACAACTACTTGGTGCATTGGCCAATAAAGCTAAAGCCAGGA 360
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 ATGGGTCTAGACTATCTTGACAACTACTTGGTGCATTGGCCAATAAAGCTAAAGCCGGGA 360
Query 361 GTGAATGAGCCTATACCAAAGGAAGATGAGTTTGAGAAAGATTTGGGGATTGAAGAAACT 420
|| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GTTAGTGAGCCTATACCAAAGGAAGATGAGTTTGAGAAAGATTTGGGAATTGAAGAAACT 420
Query 421 TGGCAAGGAATGGAGAGATGCTTGGAGATGGGTTTGTGTAAATCTATTGGTGTTAGCAAC 480
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 421 TGGCAAGGCATGGAGAGATGCTTGGAGATGGGTTTGTGCAGATCTATTGGTGTTAGCAAC 480
Query 481 TTCTCTTCTAAGAAGATCTTTGATCTCCTCGATTTCGCTTCCGTCTCGCCGTCGGTTAAC 540
||||||||||||||||||||||||||||| ||||||||||| ||||| || ||||| ||
Sbjct 481 TTCTCTTCTAAGAAGATCTTTGATCTCCTTGATTTCGCTTCTGTCTCTCCATCGGTGAAT 540
Query 541 CAGGTGGAGATGCATCCATTGTGGAGACAAAGAAAGTTAAGGAAAGTGTGTGAAGAGAAC 600
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 CAGGTGGAAATGCATCCATTGTGGAGACAAAGAAAGCTAAGGAAAGTGTGTGAAGAGAAC 600
Query 601 AATATCCATATAAGTGGATATTCCCCACTTGGTGGGCCAGGGAATTGTTGGGGATCAACG 660
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATATCCATGTAAGTGGATACTCCCCACTTGGTGGGCCAGGGAATTGTTGGGGATCAACG 660
Query 661 GCTGTGATTGAACATCCTGTTATCAAATCCATTGCTCTCAAGCATAATGCAACTCCTGCT 720
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 661 GCTGTGATTGAACATCCTATCATCAAATCCATTGCTCTCAAGCATAATGCCACTCCTGCT 720
Query 721 CAGGTGGCACTAAGATGGGGAATGTCAAAAGGAGCAAGTGTGATAGTGAAGAGTTTTAAT 780
|||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 721 CAGGTGGCTCTAAGATGGGGAATGTCAAAAGGAGCAAGTGTGATCGTCAAGAGTTTTAAT 780
Query 781 GGAGCAAGAATGAGAGAAAACAAGAGAGCCTTAGAGATTAAATTGGATGATCAAGACTTA 840
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGCAAGAATGATAGAGAACAAGAGAGCCTTAGAGATTAAATTGGATGATCAAGACTTG 840
Query 841 TCACTCATTGACCATTTGGAGGAATGGAAGATCATGAGAGGAGAGTTCCTTGTTAATCAA 900
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 841 TCACTCATTGACCATTTGGAGGAATGGAAGATCATGAGAGGAGACTTCCTTGTTAATCAA 900
Query 901 ACCACAAGCCCTTACAAATCCATCCAACAACTTTGGGATAATGAAATTTA 950
|||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 ACCACAAGCCCTTACAAATCCATCCAACAACTTTGGGATAATGAGATTTA 950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5