BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358451
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-... 806 0.0
AT5G62660.1 | Symbols: | F-box and associated interaction doma... 497 6e-140
> AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-25096635
REVERSE LENGTH=1263
Length=1263
Score = 806 bits (436), Expect = 0.0
Identities = 573/638 (90%), Gaps = 14/638 (2%)
Strand=Plus/Plus
Query 8 GAAGAGGAAGAAAAAGAAGAAGACGAAGAGGAGGCGA---TTTGGTAGCGCCGGAGATTA 64
||||| ||||| ||||||||||| |||||||| || ||| || || |||||||||
Sbjct 74 GAAGAAAAAGAAGAAGAAGAAGACAAAGAGGAGAAGATTTTTTTGTGGCACCGGAGATTC 133
Query 65 CTTTGGATCTCCAGATCGAGATTCTGACTAGATTGCCTGC-TAAATCGCTGATGAGGTTC 123
|||||||||| | ||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 134 CTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCT-CATAAATCGCTTATGAGGTTC 192
Query 124 AAGTGCGTCTCAAAGCTA-TGTTCTTCTCTTATCCTTTCCCGATATTTTAGCAACTGTTA 182
|||||||| ||||||| | || ||||||||||||| |||||||| |||||||||| ||||
Sbjct 193 AAGTGCGTTTCAAAGC-AGTGGTCTTCTCTTATCCGTTCCCGATTTTTTAGCAACCGTTA 251
Query 183 TCTTACGGTCGCATCTCCACTGCGACCACCACCTCGCCTATACATGAGTTTGGTGGACCA 242
||||||||| |||||||||||||||||| || ||| |||||||| ||||||||||||||
Sbjct 252 TCTTACGGTTGCATCTCCACTGCGACCA-CA--TCGTCTATACATTAGTTTGGTGGACCA 308
Query 243 CGAGTGTAG-TTCAACGAAGGTCTGCCACAACCCCCGCGAGTCTGTACTGCTATCATTAT 301
| ||||| | ||||| | |||||||||||| ||||||||||||||||||||||||||| |
Sbjct 309 CAAGTGT-GATTCAAGGGAGGTCTGCCACAGCCCCCGCGAGTCTGTACTGCTATCATTCT 367
Query 302 CATCATCTTCTAGTTTCGACCAAGATTTGACGACCATGCAAGGGATGGGAGGACG-CAAC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 368 CATCGCCTTCTAGTTTCGACCAAGATTTGACGACCATGCAAGGGATGGGAGGACTACAT- 426
Query 361 ATGGTGATTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTGTATCTATAAT 420
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 427 ATGGTGACTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTGTCTCTATAAT 486
Query 421 CCCACCACCAGACAGAGCGTAACCTTACCCGCCATCAAATTCAACATCTTTATTCAAGGA 480
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 487 CCCACCACCAGACAGAGCGTAACCTTACCCGCCATCAAATTCAACATTTTTGTCCAAGGA 546
Query 481 AATGACCATTGTGTACTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTA 540
|| || ||| || | |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 547 AACGAACATAGTCTCCTCTACTTCTTGGGGCACGATCCTGTTCTTGATCAATACAAAGTA 606
Query 541 GTTTGTAATTTTGTGTCATCATCTTCACAAGATTTGGACATGATAAACTTGGAGCATTGG 600
||||| | ||||||||||||||| |||||||||||||| | ||||| || ||||||||||
Sbjct 607 GTTTGCACTTTTGTGTCATCATCCTCACAAGATTTGGAAACGATAATCTCGGAGCATTGG 666
Query 601 GTCTTTGTACTAGAAGTTGGAGATTCTTGGAAAAGAAT 638
||||| ||||| |||||||||| |||||||||||||||
Sbjct 667 GTCTTCGTACTGGAAGTTGGAGGTTCTTGGAAAAGAAT 704
Score = 431 bits (233), Expect = 7e-120
Identities = 288/314 (92%), Gaps = 5/314 (2%)
Strand=Plus/Plus
Query 638 TAGATATGTTTGAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAA 697
||| ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 780 TAG-TATGTTTCAGGATATCGTTGTCACCTTTGACGTTAGGTCTGAAGAATTTAACATTA 838
Query 698 TCCAAGCGCCTCTTGTGGTGTCTGCATATGTTGGCTCTCTGGGTTTTATAGAGTATGGTG 757
||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 839 TCCAAGCGCCTCTTGTGTTGTCTGCATATGTTGACTCTCTGGATTTTATAGAGTACGGTG 898
Query 758 GGAAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTGGACTTATGGG 817
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 899 GGAAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTAGACTTATGGG 958
Query 818 TCTTGGAAAATGCTGGAAACTGGTCGATGAGA-TCTTTGAGTTTGCAGCCTTCTCAGTTG 876
||||||||||||||||||||||||||| || | | ||||||||||||||||| |||| ||
Sbjct 959 TCTTGGAAAATGCTGGAAACTGGTCGAGGACAGT-TTTGAGTTTGCAGCCTTGTCAGCTG 1017
Query 877 CATTTAGTCGATAACGACATTG-ATTTGACGGTGGAAGGTACAACTCAAAACGGCGAGGT 935
|||||||| |||||||||||| ||| |||| | | || ||||||||||||||||||||
Sbjct 1018 CATTTAGTTGATAACGACATTCCATT-GACGTTAGTAGACACAACTCAAAACGGCGAGGT 1076
Query 936 TATCTTGGTACCAA 949
| ||||||||||||
Sbjct 1077 TGTCTTGGTACCAA 1090
> AT5G62660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:25156326-25157465 REVERSE LENGTH=1140
Length=1140
Score = 497 bits (269), Expect = 6e-140
Identities = 533/656 (81%), Gaps = 36/656 (5%)
Strand=Plus/Plus
Query 1 ATGATGAGAAGAGGAAGAAAAAGAAGAAGACGAAGAGGAGGCGATTTGGTAGCGCCGGAG 60
||| |||||||||||||||||||||||||| ||| || || || |||||| |||||||||
Sbjct 61 ATGTTGAGAAGAGGAAGAAAAAGAAGAAGAAGAATAGAAGACGCTTTGGTCGCGCCGGAG 120
Query 61 ATTACTTTGGATCTCCAGATCGAGATTCTGACTAGATTGCCTGCTAAATCGCTGATGAGG 120
|| || | ||||| | ||||||||||||||||| ||||||||||||||| || |||||
Sbjct 121 ATCCCTCTCGATCTACTGATCGAGATTCTGACTAAATTGCCTGCTAAATCTCTTATGAGA 180
Query 121 TTCAAGTGCGTCTCAAAGCTATGTTCTTCTCTTATCCTTTCCCGATATTTTAGCAACTGT 180
|||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||
Sbjct 181 TTCAAGTGCGTCTCAAAGTTATGGTCTTCTCTTATCCGTTCCCGATTTTTTAGCAACTGT 240
Query 181 TATCTTACGGTCGCATCTCCACTGCGACCACCACCTCGCCTATACATGAGTTTGGTGGAC 240
|||||||||||| | |||||| | | | ||||||||| ||||||||||||||||| |||
Sbjct 241 TATCTTACGGTCAAAACTCCAC-G-G-CGACCACCTCGTCTATACATGAGTTTGGTAGAC 297
Query 241 CA---CGAGTGTAGTTCAAC-GAAGGTCTGCCACAACCCCCGCGAGTCTGTACTGCTATC 296
|| | ||||| ||| || || ||| |||||| |||| | |||||||||||||| ||
Sbjct 298 CACCTCTTGTGTAATTC-ACTGATGGTTTGCCACTACCCATGTGAGTCTGTACTGCTGTC 356
Query 297 AT-TA-TCATCATCTTCT-AG--TTTCGACCAAGATTTGACGACCA-TGCAAGGGATGGG 350
| || | | || | || || ||| || ||| ||||||| | | ||| |||||||||
Sbjct 357 GTCTAGT-AGCA-GTGCTGAGTCTTTGGAACAAAATTTGAC-A--ATTGC-AGGGATGGG 410
Query 351 AGGACGCAACATGGTGATTCTTCGTGGCTTGATTTTATACATTGTTTGCGGAAAAGCGTG 410
|||||||||||||||| ||||||| ||||||||| ||||| |||||||| ||| ||||
Sbjct 411 AGGACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATACGTTGTTTGCAGAACGGCGTC 470
Query 411 TATCTATAATCCCACCACCAGACAGAGCGTAACCTTACCCGCCATCAAATTCAACATCTT 470
|||||||||||||||||||||||| || ||||||||||| || |||||| ||||||| |
Sbjct 471 TATCTATAATCCCACCACCAGACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCT 530
Query 471 TATTCAAGGAAATGACCA-T----T-GTGTACTCTACTTCTTGGGACACGATCCTGTTCT 524
| |||| |||| ||| | | || | |||||||| || ||| |||||||||||||
Sbjct 531 TGCTCAA--AAAT-CCCACTGGAATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCT 587
Query 525 TGATCAATACAAAGTAGTTTGTAATTTTGTGTCATCAT-CTTCACAA-GATTTGGACATG 582
||||||||||||||||||||| | | ||| | | || || || || | || | | |
Sbjct 588 TGATCAATACAAAGTAGTTTGCACTGTTGCA-C-T-ATTCT-CAAAAAGGCTTA-AGAGG 642
Query 583 ATAAACTTGGAGCATTGGGTCTTTGTACTAGAAGTTGGAGATTCTTGGAAAAGAAT 638
|||| || |||||||||||||| ||||||||| |||| ||| |||||||||||
Sbjct 643 ATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAAT 698
Score = 281 bits (152), Expect = 7e-75
Identities = 255/303 (84%), Gaps = 14/303 (5%)
Strand=Plus/Plus
Query 652 GATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCG-CCTCT 710
|||||||||||||| ||||||||| | |||||||| || | || ||||||| | |||||
Sbjct 787 GATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GACCTCT 845
Query 711 TGTGGTGTCTGCATATGT-TG-GCTCTCTGGGTTTTATAGAGTATGGTGGGAAACCAGCT 768
| ||||||||||| | | || | ||| |||| ||||||||||||||||| |||||||||
Sbjct 846 TAAGGTGTCTGCAT-TTTCTGAG-TCTGTGGGATTTATAGAGTATGGTGGAAAACCAGCT 903
Query 769 ATTTTTTATCATACTAGT-CTTAAAGAAAAC-GGTTTGGTGGACTTATGGGTCTTGGAAA 826
||||| || |||| | | | ||| |||| |||||||||||||| ||||||||||||
Sbjct 904 GTTTTTGATTATACCA-TGATGAAA-CAAACGGGTTTGGTGGACTTGTGGGTCTTGGAAG 961
Query 827 ATGCTGGAAACTGGTCGATGAGATCTTTGAG-TTTGCAGCCTTCTCAGTTGCATTTAGTC 885
|||||||||| ||||| | || |||| || | ||||||||||| |||| |||||||||||
Sbjct 962 ATGCTGGAAAATGGTCAAGGAAATCTCTG-GTTTTGCAGCCTTGTCAGATGCATTTAGTC 1020
Query 886 GATAACGACATTGA-TTTGACGGTGGAAGGTACAACTCAAAACGGCGAGGTTATCTTGGT 944
||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1021 GATAATGACATTGAGTTT-AATGTGGAAGGTACAACTCAAAACGGCGAGGTTATCTTGGC 1079
Query 945 ACC 947
|||
Sbjct 1080 ACC 1082
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5