BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg358455 Length=1317 Score E Sequences producing significant alignments: (Bits) Value AT5G62550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1251 0.0 > AT5G62550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; Has 14949 Blast hits to 9947 proteins in 971 species: Archae - 43; Bacteria - 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses - 55; Other Eukaryotes - 5075 (source: NCBI BLink). | chr5:25105576-25107951 REVERSE LENGTH=1803 Length=1803 Score = 1251 bits (677), Expect = 0.0 Identities = 778/828 (94%), Gaps = 2/828 (0%) Strand=Plus/Plus Query 1 ATGGAGAAATCGATGGAGAAAAGCGTGAGCTCTGCTGCTTCTGGTAATTCAATAAACTCG 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 ATGGAGAAATCAATGGAGAAAAGCGTGAGCTCTGCTGCTTCTGGTAATTCAATAAACTCG 136 Query 61 AAGCTGAGGTATCCTCTCAGATCGGCTCTTAGATCCAAGGAAGGGAAGCCTCCTGTTCCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 137 AAGCTGAGGTATCCTCTCAGATCGGCTCTTAGATCCAAGGAAGGGAAGCCTCCTGTTCCT 196 Query 121 GATTTCTCAGCTTCTTCTGTGCCCAGAAGGGGACGAGTTGCT-TCTGCTGTTAGTCAGAG 179 |||||||| ||||||||| |||||||||||| |||||||| | ||||||||||||||||| Sbjct 197 GATTTCTCTGCTTCTTCTATGCCCAGAAGGGCACGAGTTG-TATCTGCTGTTAGTCAGAG 255 Query 180 TACAACAGTTCTTGATTTGTCTGGGAAGAAGAGTGTTGATCGAACCAAGCTACCACCAAG 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 TACAACAGTTCTTGATTTGTCTGGGAAGAAGAGTGTTGATCGAACCAAGCTACCACCAAG 315 Query 240 AAGACTTTCGATTCCAAACAAGCCCACTAGCAATTCATCTGTTAAATCAGTGCGCAGCAG 299 ||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| Sbjct 316 AAGACTTTCGATTCCAAACAAGCCCACAAGCAATTCTTCTGTTAAATCAGTGAGCAGCAG 375 Query 300 CGTCACTTCTCTTTCAGAAGTCAAGCCAAAGAGATCAGGCATTGTTGCTAGGAGCTTGAA 359 ||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||| || Sbjct 376 CGTCACTTCTCTTTCTGAAGTCAAGCCAAAGAGATCACGCATTGTTCCTAGAAGCTTCAA 435 Query 360 TGAAACAACAACACCTGTCTCTAGTAATCTCAGATCATCAATGACTCGGAGGAGAGTTGA 419 |||||||||||||||||||||||||||||||||||||||| ||||||| | || |||||| Sbjct 436 TGAAACAACAACACCTGTCTCTAGTAATCTCAGATCATCAGTGACTCGAAAGAAAGTTGA 495 Query 420 AGACTTGTCTTCCTCTACTTATTGGCTGACTCATATCAAGCTAGCTGAATCAGCAGCGAA 479 ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 496 AGACTTGTCTTCCTCTACTTATTGGCTGACTCATATCAAGCTAGCTGAATCCGTGGCGAA 555 Query 480 ACATTCAATCTCTCTTGGTTTCTTTAAACTTGCTCTTCATGCTGGGTGTGAGCCACTTGA 539 |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 556 ACATTCGATCTCTCTCGGTTTCTTTAAACTTGCTCTTCATGCAGGGTGTGAGCCACTTGA 615 Query 540 CAAGATGAAAGAAGAGTTGAAATCCTATGCTCGTCGCAATAACATGGATGGGCTTGCTGA 599 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 616 CAAGATGAAAGAAGAGTTGAAATTGTATGCTCGTCGCAATAACATGGATGGGCTTGCTGA 675 Query 600 TGCTATGAAGGAACTATCGGAACTGTACAATATCTCAGACGAATCCAAGGAGATTCAGAT 659 ||||||||||||||| |||||||||||||||||||| || |||||||| || | ||| | Sbjct 676 TGCTATGAAGGAACTTTCGGAACTGTACAATATCTCTGAAGAATCCAATCAGGTGCAGGT 735 Query 660 TTCAGAGACCAGTTCTGTTGTAGCTGAAGAAAGAACCGTGTCTCTGAACAATGATAATGA 719 || ||||| |||||||||||||||||||||| | | ||||||||||||| |||||||| Sbjct 736 CTCGGAGACTAGTTCTGTTGTAGCTGAAGAAACAGCTATGTCTCTGAACAACGATAATGA 795 Query 720 TGTCCAGAGTTCAATCTCCACTCCTGGAAATTCGAACATCACATCAGAGATCACGAAAGA 779 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 796 TGTCCAGAGTTCATTCTCCACTCCTGGAAATTCGAACATCACATCAGAGATCACGAAAGA 855 Query 780 CGATGCTTTACCGGATTCAACTGTCACAGAAACAAGTAAGGAAGAAGA 827 ||||||||| | |||||||| |||||| |||||| ||||||| |||| Sbjct 856 CGATGCTTTGCAAGATTCAACCGTCACAAAAACAACTAAGGAAAAAGA 903 Score = 701 bits (379), Expect = 0.0 Identities = 444/475 (93%), Gaps = 6/475 (1%) Strand=Plus/Plus Query 776 AAGACGATGCTTTACCGGATTCAACTGTCACAGAAACAAGTAAGGAAGAAG-AGGCCTCG 834 |||| |||||||| | |||||| ||||||||||||||| |||||||| || |||| | | Sbjct 1032 AAGAAGATGCTTTGCAAGATTCATCTGTCACAGAAACAACTAAGGAAG-AGCAGGCGTTG 1090 Query 835 GAAACTGTAACACAAGGAAGAACTAGAAAGTCTTTGGAGGTAATCAACGTGAACCAAGAG 894 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 1091 GAAACTGTAACACAAGGAAGAACTAGAAAGTCTCTGGAGGTAATCAATGTGAACCAAGAG 1150 Query 895 AATGTTTCAGAGGTTGTTCAGGAATCCGAGGAAGGGCTTCGTTCATCAGCAGATGCTGTT 954 |||| |||||||||||||||||||||||| |||||||| ||| |||||||||||| |||| Sbjct 1151 AATGATTCAGAGGTTGTTCAGGAATCCGAAGAAGGGCTCCGTCCATCAGCAGATGGTGTT 1210 Query 955 CCA-ATCGTGACTGTTGTTCAACCTTTAGACAAGAAACGTGCAAGAAAGGAGACTGTTCC 1013 || ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||| Sbjct 1211 -CAGATCGTGACTGTTGTTAAACCTTCAGACAAGAAACGTGCCAGAAAGGAGACTGTTCC 1269 Query 1014 TAAGAACAACCAGCCTGTGAGGACAAAGAAATCACTAGCAACCAACTCTGCTAATTCAAA 1073 ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1270 TAAGAACAACCTGCCGGTGAGGACAAAGAAATCACTAGCAACCAACTCTGCTAATTCAAA 1329 Query 1074 GACAGTTCCAA-TAAACAAGGATGATAAGTCTCAGAAGAAGTCTGAGAGGATCACTAAAC 1132 |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1330 AACAGTT-CAAGTAAACAAGGATGATAAGTCTCAGAAGAAGTCTGAGAGGATCACTAAAC 1388 Query 1133 CCAGGACTAAAAAAGTTCAAGAAGAGACAAAGAAGTCAATTAAGAAATCTACTGCAAAAG 1192 |||||||||| | ||||||||||||| |||||||||||||||||||||||||||| |||| Sbjct 1389 CCAGGACTAAGAGAGTTCAAGAAGAGTCAAAGAAGTCAATTAAGAAATCTACTGCTAAAG 1448 Query 1193 AAGGTGAAGTTAAATCTCTGAAGCAAACAGAGAAAATGGAGAACAAAGAAAACAC 1247 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1449 AAGGTGAAGTTAAATCTCTGAAGCAAACAGAGAAAATGGAGAACAAAGAAAACAC 1503 Score = 63.9 bits (34), Expect = 4e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1281 GGTTGTTGGTGGTGCAGGAGAAGACATCCAGGTTTAA 1317 |||||||| |||||||||||||||||||||||||||| Sbjct 1504 GGTTGTTGTTGGTGCAGGAGAAGACATCCAGGTTTAA 1540 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64808903595 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5