BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358455
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1251 0.0
> AT5G62550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; Has 14949 Blast
hits to 9947 proteins in 971 species: Archae - 43; Bacteria
- 3248; Metazoa - 4424; Fungi - 1542; Plants - 562; Viruses
- 55; Other Eukaryotes - 5075 (source: NCBI BLink). | chr5:25105576-25107951
REVERSE LENGTH=1803
Length=1803
Score = 1251 bits (677), Expect = 0.0
Identities = 778/828 (94%), Gaps = 2/828 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAATCGATGGAGAAAAGCGTGAGCTCTGCTGCTTCTGGTAATTCAATAAACTCG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 ATGGAGAAATCAATGGAGAAAAGCGTGAGCTCTGCTGCTTCTGGTAATTCAATAAACTCG 136
Query 61 AAGCTGAGGTATCCTCTCAGATCGGCTCTTAGATCCAAGGAAGGGAAGCCTCCTGTTCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AAGCTGAGGTATCCTCTCAGATCGGCTCTTAGATCCAAGGAAGGGAAGCCTCCTGTTCCT 196
Query 121 GATTTCTCAGCTTCTTCTGTGCCCAGAAGGGGACGAGTTGCT-TCTGCTGTTAGTCAGAG 179
|||||||| ||||||||| |||||||||||| |||||||| | |||||||||||||||||
Sbjct 197 GATTTCTCTGCTTCTTCTATGCCCAGAAGGGCACGAGTTG-TATCTGCTGTTAGTCAGAG 255
Query 180 TACAACAGTTCTTGATTTGTCTGGGAAGAAGAGTGTTGATCGAACCAAGCTACCACCAAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TACAACAGTTCTTGATTTGTCTGGGAAGAAGAGTGTTGATCGAACCAAGCTACCACCAAG 315
Query 240 AAGACTTTCGATTCCAAACAAGCCCACTAGCAATTCATCTGTTAAATCAGTGCGCAGCAG 299
||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 316 AAGACTTTCGATTCCAAACAAGCCCACAAGCAATTCTTCTGTTAAATCAGTGAGCAGCAG 375
Query 300 CGTCACTTCTCTTTCAGAAGTCAAGCCAAAGAGATCAGGCATTGTTGCTAGGAGCTTGAA 359
||||||||||||||| ||||||||||||||||||||| |||||||| |||| ||||| ||
Sbjct 376 CGTCACTTCTCTTTCTGAAGTCAAGCCAAAGAGATCACGCATTGTTCCTAGAAGCTTCAA 435
Query 360 TGAAACAACAACACCTGTCTCTAGTAATCTCAGATCATCAATGACTCGGAGGAGAGTTGA 419
|||||||||||||||||||||||||||||||||||||||| ||||||| | || ||||||
Sbjct 436 TGAAACAACAACACCTGTCTCTAGTAATCTCAGATCATCAGTGACTCGAAAGAAAGTTGA 495
Query 420 AGACTTGTCTTCCTCTACTTATTGGCTGACTCATATCAAGCTAGCTGAATCAGCAGCGAA 479
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 496 AGACTTGTCTTCCTCTACTTATTGGCTGACTCATATCAAGCTAGCTGAATCCGTGGCGAA 555
Query 480 ACATTCAATCTCTCTTGGTTTCTTTAAACTTGCTCTTCATGCTGGGTGTGAGCCACTTGA 539
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 556 ACATTCGATCTCTCTCGGTTTCTTTAAACTTGCTCTTCATGCAGGGTGTGAGCCACTTGA 615
Query 540 CAAGATGAAAGAAGAGTTGAAATCCTATGCTCGTCGCAATAACATGGATGGGCTTGCTGA 599
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 616 CAAGATGAAAGAAGAGTTGAAATTGTATGCTCGTCGCAATAACATGGATGGGCTTGCTGA 675
Query 600 TGCTATGAAGGAACTATCGGAACTGTACAATATCTCAGACGAATCCAAGGAGATTCAGAT 659
||||||||||||||| |||||||||||||||||||| || |||||||| || | ||| |
Sbjct 676 TGCTATGAAGGAACTTTCGGAACTGTACAATATCTCTGAAGAATCCAATCAGGTGCAGGT 735
Query 660 TTCAGAGACCAGTTCTGTTGTAGCTGAAGAAAGAACCGTGTCTCTGAACAATGATAATGA 719
|| ||||| |||||||||||||||||||||| | | ||||||||||||| ||||||||
Sbjct 736 CTCGGAGACTAGTTCTGTTGTAGCTGAAGAAACAGCTATGTCTCTGAACAACGATAATGA 795
Query 720 TGTCCAGAGTTCAATCTCCACTCCTGGAAATTCGAACATCACATCAGAGATCACGAAAGA 779
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 TGTCCAGAGTTCATTCTCCACTCCTGGAAATTCGAACATCACATCAGAGATCACGAAAGA 855
Query 780 CGATGCTTTACCGGATTCAACTGTCACAGAAACAAGTAAGGAAGAAGA 827
||||||||| | |||||||| |||||| |||||| ||||||| ||||
Sbjct 856 CGATGCTTTGCAAGATTCAACCGTCACAAAAACAACTAAGGAAAAAGA 903
Score = 701 bits (379), Expect = 0.0
Identities = 444/475 (93%), Gaps = 6/475 (1%)
Strand=Plus/Plus
Query 776 AAGACGATGCTTTACCGGATTCAACTGTCACAGAAACAAGTAAGGAAGAAG-AGGCCTCG 834
|||| |||||||| | |||||| ||||||||||||||| |||||||| || |||| | |
Sbjct 1032 AAGAAGATGCTTTGCAAGATTCATCTGTCACAGAAACAACTAAGGAAG-AGCAGGCGTTG 1090
Query 835 GAAACTGTAACACAAGGAAGAACTAGAAAGTCTTTGGAGGTAATCAACGTGAACCAAGAG 894
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1091 GAAACTGTAACACAAGGAAGAACTAGAAAGTCTCTGGAGGTAATCAATGTGAACCAAGAG 1150
Query 895 AATGTTTCAGAGGTTGTTCAGGAATCCGAGGAAGGGCTTCGTTCATCAGCAGATGCTGTT 954
|||| |||||||||||||||||||||||| |||||||| ||| |||||||||||| ||||
Sbjct 1151 AATGATTCAGAGGTTGTTCAGGAATCCGAAGAAGGGCTCCGTCCATCAGCAGATGGTGTT 1210
Query 955 CCA-ATCGTGACTGTTGTTCAACCTTTAGACAAGAAACGTGCAAGAAAGGAGACTGTTCC 1013
|| ||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||
Sbjct 1211 -CAGATCGTGACTGTTGTTAAACCTTCAGACAAGAAACGTGCCAGAAAGGAGACTGTTCC 1269
Query 1014 TAAGAACAACCAGCCTGTGAGGACAAAGAAATCACTAGCAACCAACTCTGCTAATTCAAA 1073
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 TAAGAACAACCTGCCGGTGAGGACAAAGAAATCACTAGCAACCAACTCTGCTAATTCAAA 1329
Query 1074 GACAGTTCCAA-TAAACAAGGATGATAAGTCTCAGAAGAAGTCTGAGAGGATCACTAAAC 1132
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 AACAGTT-CAAGTAAACAAGGATGATAAGTCTCAGAAGAAGTCTGAGAGGATCACTAAAC 1388
Query 1133 CCAGGACTAAAAAAGTTCAAGAAGAGACAAAGAAGTCAATTAAGAAATCTACTGCAAAAG 1192
|||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1389 CCAGGACTAAGAGAGTTCAAGAAGAGTCAAAGAAGTCAATTAAGAAATCTACTGCTAAAG 1448
Query 1193 AAGGTGAAGTTAAATCTCTGAAGCAAACAGAGAAAATGGAGAACAAAGAAAACAC 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 AAGGTGAAGTTAAATCTCTGAAGCAAACAGAGAAAATGGAGAACAAAGAAAACAC 1503
Score = 63.9 bits (34), Expect = 4e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1281 GGTTGTTGGTGGTGCAGGAGAAGACATCCAGGTTTAA 1317
|||||||| ||||||||||||||||||||||||||||
Sbjct 1504 GGTTGTTGTTGGTGCAGGAGAAGACATCCAGGTTTAA 1540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5