BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg358465 Length=1428 Score E Sequences producing significant alignments: (Bits) Value AT5G62660.1 | Symbols: | F-box and associated interaction doma... 845 0.0 AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-... 710 0.0 > AT5G62660.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:25156326-25157465 REVERSE LENGTH=1140 Length=1140 Score = 845 bits (457), Expect = 0.0 Identities = 812/977 (83%), Gaps = 50/977 (5%) Strand=Plus/Plus Query 4 AGAAGAAGACGAGGGGACG-ATTGGTTCGCATCGGAGATTCCTTTGGATCTCCAGATCGA 62 ||||||||| || |||| |||| |||| ||||||| ||| | ||||| | |||||| Sbjct 85 AGAAGAAGAATAGAAGACGCTTTGG-TCGCGCCGGAGATCCCTCTCGATCTACTGATCGA 143 Query 63 GATTCTGATTAGATTGCCTGCTAAATCGCTGATGAGGTTCAAGTGCGTTTCAAAGCTCTG 122 |||||||| || ||||||||||||||| || ||||| ||||||||||| |||||| | || Sbjct 144 GATTCTGACTAAATTGCCTGCTAAATCTCTTATGAGATTCAAGTGCGTCTCAAAGTTATG 203 Query 123 GTTTTCTCTTATCCGTTGTCGATATTTTAGCAATC-GTTATCTTACGGTGGCTTCCCCAC 181 || |||||||||||||| |||| ||||||||| | ||||||||||||| | |||| Sbjct 204 GTCTTCTCTTATCCGTTCCCGATTTTTTAGCAA-CTGTTATCTTACGGTCAAAACTCCAC 262 Query 182 CGCGAGCACCTCGTCTATACATGAGTTTGGTGGACCACATCCAGTGTAATTCAATGGA-A 240 |||| ||||||||||||||||||||||||| |||||| || |||||||||| | || Sbjct 263 GGCGACCACCTCGTCTATACATGAGTTTGGTAGACCACCTCTTGTGTAATTCACT-GATG 321 Query 241 GTCTGCTA-TAACCC-TCGCGAGTCTGTATTGCTATCATTATCATCATCGTCTAGTACTG 298 || ||| | | |||| | | ||||||||| |||| || || | | | ||| | | Sbjct 322 GTTTGCCACT-ACCCAT-GTGAGTCTGTACTGCTGTC---GTC-T-A--G--TAG--CAG 368 Query 299 ATGCAAAGTCTTTCCACCAAGATTTGACAA-TGCCAGGGATGGGAGGACGCAACATGATG 357 ||| ||||||| | ||| ||||||||| || ||||||||||||||||||||||| || Sbjct 369 -TGCTGAGTCTTTGGAACAAAATTTGACAATTG-CAGGGATGGGAGGACGCAACATGGTG 426 Query 358 ATTCTTCGCGGCTTGATTCTATACATTGTTTGCAGAAAGGCGTGTATCTATAATCCCACC 417 ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| Sbjct 427 GTTCTTCGCGGCTTGATTCTATACGTTGTTTGCAGAACGGCGTCTATCTATAATCCCACC 486 Query 418 ACCAGACAATGTGTAACCTTACCCGCCGTCCAATCCAACATTTTTGCTCAAGAAGATTAT 477 ||||||||| ||||||||||||| || ||| |||||||||| |||||||| || | | Sbjct 487 ACCAGACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCTTGCTCAA-AA-A-TCC 543 Query 478 CA-T--AAGAGTGTCCTCTACTTTTTAGGACACGATCCTGTTCTTGATCAATACAAAGTA 534 || | || ||| ||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 544 CACTGGAATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTA 603 Query 535 GTTTGCACTGTTGCAGTATCCTCAAAAAGGTTTAAGAGGATAACCTCAGAGCATTGGGTC 594 ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 604 GTTTGCACTGTTGCACTATTCTCAAAAAGGCTTAAGAGGATAACCTCAGAGCATTGGGTC 663 Query 595 TTCGTACTAGAACCCGGAGGTTCGTGGAAAAGAATTGAGTTTGATCTACCTCATTGTCC- 653 |||||||||||||| ||||||||||||||||||||||| || |||| ||||||| ||| Sbjct 664 TTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATC-TCCC 722 Query 654 TGC-ACGACTAGGACTGTGCATCAACGGAGTCATATATTTTTTGGCTTCCGCTTGTATGT 712 | | | |||||||| ||||| |||| ||||| ||||||| |||||||||| |||| | | Sbjct 723 TACGA-GACTAGGATTGTGCGTCAATGGAGTTATATATTATTTGGCTTCCACTTGGAAG- 780 Query 713 C-TAGCGATATCCTTGTCAGTTTTGATGTTATGTCTGAAGAGTTCAA-ATGGATCCAAGG 770 | | | |||||| ||||||||||||| ||| |||||||||||||| ||| |||||||| Sbjct 781 CGTCGTGATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATG-ATCCAAGG 839 Query 771 ACCTCCTGTCGCGTCTGCATTTA---AGCCCATGGGTTTTATAGAGTATCTTGGAAAACC 827 ||||| | | |||||||||| || | |||| |||||||||||| ||||||||| Sbjct 840 ACCTCTTAAGGTGTCTGCATTTTCTGAGTCTGTGGGATTTATAGAGTATGGTGGAAAACC 899 Query 828 ATCTGTTTTTGATCATTCCCATCTT-AAACGCAAA-GG-TTCCGTGGACTTATGGGTCTT 884 | ||||||||||| || || || | |||| ||| || || |||||||| |||||||| Sbjct 900 AGCTGTTTTTGATTATACC-ATGATGAAAC--AAACGGGTTTGGTGGACTTGTGGGTCTT 956 Query 885 GGAAGATGCTGGAAAATGGTCGAAG-AAATCCCTGGTTTTGCAGCCTTGTCAGATGCATT 943 ||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| Sbjct 957 GGAAGATGCTGGAAAATGGTC-AAGGAAATCTCTGGTTTTGCAGCCTTGTCAGATGCATT 1015 Query 944 TAGTTGATAA-GAAATT 959 |||| ||||| || ||| Sbjct 1016 TAGTCGATAATGACATT 1032 Score = 311 bits (168), Expect = 1e-83 Identities = 358/447 (80%), Gaps = 24/447 (5%) Strand=Plus/Plus Query 986 ATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGTA 1045 ||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||| | Sbjct 551 ATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCA 610 Query 1046 ATTTTGTGTCATCAT-CTTCACAA-GATTTGGACATGATAAACTTGGAGCATTGGGTCTT 1103 | ||| | | || || || || | || | | ||||| || |||||||||||||| Sbjct 611 CTGTTGCA-C-T-ATTCT-CAAAAAGGCTTA-AGAGGATAACCTCAGAGCATTGGGTCTT 665 Query 1104 CGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTCATATATCTAC 1163 |||||||||| |||| ||| ||||||||||| || || |||||||||||| | |||| Sbjct 666 CGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATCTCCCTAC 725 Query 1164 AAGACCT-GGACTGTGCATCGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTTT 1221 |||| | ||| ||||| || |||||||||||||||| ||| ||| |||| | | | | Sbjct 726 GAGAC-TAGGATTGTGCGTCAATGGAGTTATATATTAT-TTGGCTTCCACTTGGAAGCGT 783 Query 1222 -GAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCG-C 1279 | | ||||||||||||| ||||||||| | |||||||| || | || ||||||| | | Sbjct 784 CGTG-ATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GAC 841 Query 1280 CTCTTGTGGTGTCTGCATATGT-TG-GCTCTCTGGGTTTTATAGAGTATGGTGGGAAACC 1337 ||||| ||||||||||| | | || | ||| |||| ||||||||||||||||| ||||| Sbjct 842 CTCTTAAGGTGTCTGCATTT-TCTGAG-TCTGTGGGATTTATAGAGTATGGTGGAAAACC 899 Query 1338 AGCTATTTTTTATCATACTAGTCTT-AAAGAAAACGG-TTTGGTGGACTTATGGGTCTTG 1395 |||| ||||| || |||| | | | ||| ||| ||| |||||||||||| ||||||||| Sbjct 900 AGCTGTTTTTGATTATACCA-TGATGAAACAAA-CGGGTTTGGTGGACTTGTGGGTCTTG 957 Query 1396 GAA-ATGCTGGAAACTGGTCGAGGAAA 1421 ||| |||||||||| ||||| |||||| Sbjct 958 GAAGATGCTGGAAAATGGTCAAGGAAA 984 > AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-25096635 REVERSE LENGTH=1263 Length=1263 Score = 710 bits (384), Expect = 0.0 Identities = 791/975 (81%), Gaps = 77/975 (8%) Strand=Plus/Plus Query 31 GCATCGGAGATTCCTTTGGATCTCCAGATCGAGATTCTGATTAGATTGCCTGC-TAAATC 89 ||| ||||||||||||||||||| | |||||||||||||| |||||||||| | |||||| Sbjct 121 GCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCT-CATAAATC 179 Query 90 GCTGATGAGGTTCAAGTGCGTTTCAAAGCTCTGGTTTTCTCTTATCCGTTGTCGATATTT 149 ||| ||||||||||||||||||||||||| |||| |||||||||||||| |||| ||| Sbjct 180 GCTTATGAGGTTCAAGTGCGTTTCAAAGCAGTGGTCTTCTCTTATCCGTTCCCGATTTTT 239 Query 150 TAGCAATCGTTATCTTACGGTGGCTTCCCCACCGCGAGCACCTCGTCTATACATGAGTTT 209 |||||| |||||||||||||| || || |||| |||| ||| |||||||||||| ||||| Sbjct 240 TAGCAACCGTTATCTTACGGTTGCATCTCCACTGCGACCACATCGTCTATACATTAGTTT 299 Query 210 GGTGGACCACATCCAGTGTAATTCAATGGAAGTCTGCTATAACCCTCGCGAGTCTGTATT 269 ||||||||||| ||||| |||||| ||| |||||| | | ||| |||||||||||| | Sbjct 300 GGTGGACCACA---AGTGTGATTCAAGGGAGGTCTGCCACAGCCCCCGCGAGTCTGTACT 356 Query 270 GCTATCATTATCATCATCGTCTAGTACTGATGCAAAGTCTTTCCACCAAGATTTGAC-A- 327 ||||||| | || |||||| | || | | || |||| ||||||||||||| | Sbjct 357 GCTATCA-T-TC-TCATCG-C-----CT--T-C-TAG--TTTCGACCAAGATTTGACGAC 401 Query 328 -ATGCCAGGGATGGGAGGACGCA-ACATGATGATTCTTCGCGGCTTGATTCTATACATTG 385 |||| |||||||||||||| | | ||| ||| |||||| ||||||||| ||||||||| Sbjct 402 CATGCAAGGGATGGGAGGAC-TACATATGGTGACTCTTCGTGGCTTGATTTTATACATTG 460 Query 386 TTTGCAGAAAGGCGTGTATCTATAATCCCACCACCAGACA-ATGTGTAACCTTACCCGCC 444 ||||| |||| |||||| |||||||||||||||||||||| | | ||||||||||||||| Sbjct 461 TTTGCGGAAAAGCGTGTCTCTATAATCCCACCACCAGACAGA-GCGTAACCTTACCCGCC 519 Query 445 GTCCAATCCAACATTTTTGCT-CAA-GAAGATTATCATAAGAGTGTCCTCTACTTTTTAG 502 || ||| ||||||||||| | ||| ||| | | ||| ||| |||||||||| || | Sbjct 520 ATCAAATTCAACATTTTTG-TCCAAGGAA-ACGAACAT---AGTCTCCTCTACTTCTTGG 574 Query 503 GACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTG---CAGT-ATCCTCA 558 | ||||||||||||||||||||||||||||||||||||||| ||| || | ||||||| Sbjct 575 GGCACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTTTTGTGTCA-TCATCCTCA 633 Query 559 AAAAGGTTT--AAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCCGGAGGTT 616 || | ||| || | ||||| ||| |||||||||||||||||||| ||| ||||||| Sbjct 634 CAA-GATTTGGAA-ACGATAATCTCGGAGCATTGGGTCTTCGTACTGGAAGTTGGAGGTT 691 Query 617 CGTGGAAAAGAATTGAGTTTGATCTACCTCATTGTCCTGC-ACGA-CTAGGACTGTGCAT 674 | |||||||||||||||||||||| ||||||| |||| | | || || ||||||||||| Sbjct 692 CTTGGAAAAGAATTGAGTTTGATCAACCTCATACTCCTACGA-GATCT-GGACTGTGCAT 749 Query 675 CAACGGAGTCATATATTTT-TTGGCTTCCGCTTGTATGTCT-AGCGATATCCTTGTCAGT 732 | ||||| ||||||| | ||| ||| | || |||||| | || |||||| |||||| Sbjct 750 CGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTTTCAG-GATATCGTTGTCACC 807 Query 733 TTTGATGTTATGTCTGAAGAGTTCAA-ATGGATCCAAG-GACCTCCTGTCGC-GTCTGCA 789 ||||| |||| ||||||||| || || || ||||||| | |||| ||| | ||||||| Sbjct 808 TTTGACGTTAGGTCTGAAGAATTTAACATT-ATCCAAGCG-CCTCTTGT-GTTGTCTGCA 864 Query 790 T-T-TA-AGC-C-CATGGGTTTTATAGAGTATCT-TGGAAAACCATCTGTTTTTGATCAT 843 | | | | | | | ||| |||||||||||| | ||| |||||| || ||||| ||||| Sbjct 865 TATGTTGA-CTCTC-TGGATTTTATAGAGTA-CGGTGGGAAACCAGCTATTTTTTATCAT 921 Query 844 TCCCA-TCTTAAACGCAAA-GGTTCCGTGGACTTATGGGTCTTGGAAGATGCTGGAAAAT 901 | | ||||||| | ||| |||| || |||||||||||||||||| |||||||||| | Sbjct 922 ACT-AGTCTTAAA-GAAAACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAAACT 979 Query 902 GGTCGAAGAAA-TCCCTG-GTTTTGCAGCCTTGTCAGATGCATTTAGTTGATAA-GAAAT 958 |||||| || | | || |||| ||||||||||||| |||||||||||||||| || || Sbjct 980 GGTCGAGGACAGTTT-TGAGTTT-GCAGCCTTGTCAGCTGCATTTAGTTGATAACGACAT 1037 Query 959 TATCATTCACGGTTA 973 | |||| ||| ||| Sbjct 1038 TC-CATTGACG-TTA 1050 Score = 669 bits (362), Expect = 0.0 Identities = 426/457 (93%), Gaps = 3/457 (1%) Strand=Plus/Plus Query 974 AAGGAAATGATCATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACA 1033 ||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 542 AAGGAAACGAACATAGTCTCCTCTACTTCTTGGGGCACGATCCTGTTCTTGATCAATACA 601 Query 1034 AAGTAGTTTGTAATTTTGTGTCATCATCTTCACAAGATTTGGACATGATAAACTTGGAGC 1093 |||||||||| | ||||||||||||||| |||||||||||||| | ||||| || ||||| Sbjct 602 AAGTAGTTTGCACTTTTGTGTCATCATCCTCACAAGATTTGGAAACGATAATCTCGGAGC 661 Query 1094 ATTGGGTCTTCGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTC 1153 |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| Sbjct 662 ATTGGGTCTTCGTACTGGAAGTTGGAGGTTCTTGGAAAAGAATTGAGTTTGATCAACCTC 721 Query 1154 ATATAT-CTACAAGACCTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACT 1212 ||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 ATA-CTCCTACGAGATCTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACT 780 Query 1213 AGTATGTTTGAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATC 1272 ||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| ||| Sbjct 781 AGTATGTTTCAGGATATCGTTGTCACCTTTGACGTTAGGTCTGAAGAATTTAACATTATC 840 Query 1273 CAAGCGCCTCTTGTGGTGTCTGCATATGTTGGCTCTCTGGGTTTTATAGAGTATGGTGGG 1332 ||||||||||||||| ||||||||||||||| |||||||| |||||||||||| |||||| Sbjct 841 CAAGCGCCTCTTGTGTTGTCTGCATATGTTGACTCTCTGGATTTTATAGAGTACGGTGGG 900 Query 1333 AAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTGGACTTATGGGTC 1392 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 901 AAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTAGACTTATGGGTC 960 Query 1393 TTGGAAA-TGCTGGAAACTGGTCGAGGAAAGCTTTGA 1428 ||||||| |||||||||||||||||||| || ||||| Sbjct 961 TTGGAAAATGCTGGAAACTGGTCGAGGACAGTTTTGA 997 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70381164090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5