BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358465
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62660.1 | Symbols: | F-box and associated interaction doma... 845 0.0
AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-... 710 0.0
> AT5G62660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:25156326-25157465 REVERSE LENGTH=1140
Length=1140
Score = 845 bits (457), Expect = 0.0
Identities = 812/977 (83%), Gaps = 50/977 (5%)
Strand=Plus/Plus
Query 4 AGAAGAAGACGAGGGGACG-ATTGGTTCGCATCGGAGATTCCTTTGGATCTCCAGATCGA 62
||||||||| || |||| |||| |||| ||||||| ||| | ||||| | ||||||
Sbjct 85 AGAAGAAGAATAGAAGACGCTTTGG-TCGCGCCGGAGATCCCTCTCGATCTACTGATCGA 143
Query 63 GATTCTGATTAGATTGCCTGCTAAATCGCTGATGAGGTTCAAGTGCGTTTCAAAGCTCTG 122
|||||||| || ||||||||||||||| || ||||| ||||||||||| |||||| | ||
Sbjct 144 GATTCTGACTAAATTGCCTGCTAAATCTCTTATGAGATTCAAGTGCGTCTCAAAGTTATG 203
Query 123 GTTTTCTCTTATCCGTTGTCGATATTTTAGCAATC-GTTATCTTACGGTGGCTTCCCCAC 181
|| |||||||||||||| |||| ||||||||| | ||||||||||||| | ||||
Sbjct 204 GTCTTCTCTTATCCGTTCCCGATTTTTTAGCAA-CTGTTATCTTACGGTCAAAACTCCAC 262
Query 182 CGCGAGCACCTCGTCTATACATGAGTTTGGTGGACCACATCCAGTGTAATTCAATGGA-A 240
|||| ||||||||||||||||||||||||| |||||| || |||||||||| | ||
Sbjct 263 GGCGACCACCTCGTCTATACATGAGTTTGGTAGACCACCTCTTGTGTAATTCACT-GATG 321
Query 241 GTCTGCTA-TAACCC-TCGCGAGTCTGTATTGCTATCATTATCATCATCGTCTAGTACTG 298
|| ||| | | |||| | | ||||||||| |||| || || | | | ||| | |
Sbjct 322 GTTTGCCACT-ACCCAT-GTGAGTCTGTACTGCTGTC---GTC-T-A--G--TAG--CAG 368
Query 299 ATGCAAAGTCTTTCCACCAAGATTTGACAA-TGCCAGGGATGGGAGGACGCAACATGATG 357
||| ||||||| | ||| ||||||||| || ||||||||||||||||||||||| ||
Sbjct 369 -TGCTGAGTCTTTGGAACAAAATTTGACAATTG-CAGGGATGGGAGGACGCAACATGGTG 426
Query 358 ATTCTTCGCGGCTTGATTCTATACATTGTTTGCAGAAAGGCGTGTATCTATAATCCCACC 417
||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 427 GTTCTTCGCGGCTTGATTCTATACGTTGTTTGCAGAACGGCGTCTATCTATAATCCCACC 486
Query 418 ACCAGACAATGTGTAACCTTACCCGCCGTCCAATCCAACATTTTTGCTCAAGAAGATTAT 477
||||||||| ||||||||||||| || ||| |||||||||| |||||||| || | |
Sbjct 487 ACCAGACAAAGTGTAACCTTACCTGCTGTCAAATCCAACATCCTTGCTCAA-AA-A-TCC 543
Query 478 CA-T--AAGAGTGTCCTCTACTTTTTAGGACACGATCCTGTTCTTGATCAATACAAAGTA 534
|| | || ||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 544 CACTGGAATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTA 603
Query 535 GTTTGCACTGTTGCAGTATCCTCAAAAAGGTTTAAGAGGATAACCTCAGAGCATTGGGTC 594
||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 604 GTTTGCACTGTTGCACTATTCTCAAAAAGGCTTAAGAGGATAACCTCAGAGCATTGGGTC 663
Query 595 TTCGTACTAGAACCCGGAGGTTCGTGGAAAAGAATTGAGTTTGATCTACCTCATTGTCC- 653
|||||||||||||| ||||||||||||||||||||||| || |||| ||||||| |||
Sbjct 664 TTCGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATC-TCCC 722
Query 654 TGC-ACGACTAGGACTGTGCATCAACGGAGTCATATATTTTTTGGCTTCCGCTTGTATGT 712
| | | |||||||| ||||| |||| ||||| ||||||| |||||||||| |||| | |
Sbjct 723 TACGA-GACTAGGATTGTGCGTCAATGGAGTTATATATTATTTGGCTTCCACTTGGAAG- 780
Query 713 C-TAGCGATATCCTTGTCAGTTTTGATGTTATGTCTGAAGAGTTCAA-ATGGATCCAAGG 770
| | | |||||| ||||||||||||| ||| |||||||||||||| ||| ||||||||
Sbjct 781 CGTCGTGATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATG-ATCCAAGG 839
Query 771 ACCTCCTGTCGCGTCTGCATTTA---AGCCCATGGGTTTTATAGAGTATCTTGGAAAACC 827
||||| | | |||||||||| || | |||| |||||||||||| |||||||||
Sbjct 840 ACCTCTTAAGGTGTCTGCATTTTCTGAGTCTGTGGGATTTATAGAGTATGGTGGAAAACC 899
Query 828 ATCTGTTTTTGATCATTCCCATCTT-AAACGCAAA-GG-TTCCGTGGACTTATGGGTCTT 884
| ||||||||||| || || || | |||| ||| || || |||||||| ||||||||
Sbjct 900 AGCTGTTTTTGATTATACC-ATGATGAAAC--AAACGGGTTTGGTGGACTTGTGGGTCTT 956
Query 885 GGAAGATGCTGGAAAATGGTCGAAG-AAATCCCTGGTTTTGCAGCCTTGTCAGATGCATT 943
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 957 GGAAGATGCTGGAAAATGGTC-AAGGAAATCTCTGGTTTTGCAGCCTTGTCAGATGCATT 1015
Query 944 TAGTTGATAA-GAAATT 959
|||| ||||| || |||
Sbjct 1016 TAGTCGATAATGACATT 1032
Score = 311 bits (168), Expect = 1e-83
Identities = 358/447 (80%), Gaps = 24/447 (5%)
Strand=Plus/Plus
Query 986 ATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGTA 1045
||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||| |
Sbjct 551 ATAGTCTCCTCTACTTTTTCGGATACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCA 610
Query 1046 ATTTTGTGTCATCAT-CTTCACAA-GATTTGGACATGATAAACTTGGAGCATTGGGTCTT 1103
| ||| | | || || || || | || | | ||||| || ||||||||||||||
Sbjct 611 CTGTTGCA-C-T-ATTCT-CAAAAAGGCTTA-AGAGGATAACCTCAGAGCATTGGGTCTT 665
Query 1104 CGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTCATATATCTAC 1163
|||||||||| |||| ||| ||||||||||| || || |||||||||||| | ||||
Sbjct 666 CGTACTAGAACCAGGAGGTTCGTGGAAAAGAATTGAATTCGATCAACCTCATCTCCCTAC 725
Query 1164 AAGACCT-GGACTGTGCATCGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTTT 1221
|||| | ||| ||||| || |||||||||||||||| ||| ||| |||| | | | |
Sbjct 726 GAGAC-TAGGATTGTGCGTCAATGGAGTTATATATTAT-TTGGCTTCCACTTGGAAGCGT 783
Query 1222 -GAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATCCAAGCG-C 1279
| | ||||||||||||| ||||||||| | |||||||| || | || ||||||| | |
Sbjct 784 CGTG-ATATCGTTGTCAGTTTTGACGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GAC 841
Query 1280 CTCTTGTGGTGTCTGCATATGT-TG-GCTCTCTGGGTTTTATAGAGTATGGTGGGAAACC 1337
||||| ||||||||||| | | || | ||| |||| ||||||||||||||||| |||||
Sbjct 842 CTCTTAAGGTGTCTGCATTT-TCTGAG-TCTGTGGGATTTATAGAGTATGGTGGAAAACC 899
Query 1338 AGCTATTTTTTATCATACTAGTCTT-AAAGAAAACGG-TTTGGTGGACTTATGGGTCTTG 1395
|||| ||||| || |||| | | | ||| ||| ||| |||||||||||| |||||||||
Sbjct 900 AGCTGTTTTTGATTATACCA-TGATGAAACAAA-CGGGTTTGGTGGACTTGTGGGTCTTG 957
Query 1396 GAA-ATGCTGGAAACTGGTCGAGGAAA 1421
||| |||||||||| ||||| ||||||
Sbjct 958 GAAGATGCTGGAAAATGGTCAAGGAAA 984
> AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-25096635
REVERSE LENGTH=1263
Length=1263
Score = 710 bits (384), Expect = 0.0
Identities = 791/975 (81%), Gaps = 77/975 (8%)
Strand=Plus/Plus
Query 31 GCATCGGAGATTCCTTTGGATCTCCAGATCGAGATTCTGATTAGATTGCCTGC-TAAATC 89
||| ||||||||||||||||||| | |||||||||||||| |||||||||| | ||||||
Sbjct 121 GCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCT-CATAAATC 179
Query 90 GCTGATGAGGTTCAAGTGCGTTTCAAAGCTCTGGTTTTCTCTTATCCGTTGTCGATATTT 149
||| ||||||||||||||||||||||||| |||| |||||||||||||| |||| |||
Sbjct 180 GCTTATGAGGTTCAAGTGCGTTTCAAAGCAGTGGTCTTCTCTTATCCGTTCCCGATTTTT 239
Query 150 TAGCAATCGTTATCTTACGGTGGCTTCCCCACCGCGAGCACCTCGTCTATACATGAGTTT 209
|||||| |||||||||||||| || || |||| |||| ||| |||||||||||| |||||
Sbjct 240 TAGCAACCGTTATCTTACGGTTGCATCTCCACTGCGACCACATCGTCTATACATTAGTTT 299
Query 210 GGTGGACCACATCCAGTGTAATTCAATGGAAGTCTGCTATAACCCTCGCGAGTCTGTATT 269
||||||||||| ||||| |||||| ||| |||||| | | ||| |||||||||||| |
Sbjct 300 GGTGGACCACA---AGTGTGATTCAAGGGAGGTCTGCCACAGCCCCCGCGAGTCTGTACT 356
Query 270 GCTATCATTATCATCATCGTCTAGTACTGATGCAAAGTCTTTCCACCAAGATTTGAC-A- 327
||||||| | || |||||| | || | | || |||| ||||||||||||| |
Sbjct 357 GCTATCA-T-TC-TCATCG-C-----CT--T-C-TAG--TTTCGACCAAGATTTGACGAC 401
Query 328 -ATGCCAGGGATGGGAGGACGCA-ACATGATGATTCTTCGCGGCTTGATTCTATACATTG 385
|||| |||||||||||||| | | ||| ||| |||||| ||||||||| |||||||||
Sbjct 402 CATGCAAGGGATGGGAGGAC-TACATATGGTGACTCTTCGTGGCTTGATTTTATACATTG 460
Query 386 TTTGCAGAAAGGCGTGTATCTATAATCCCACCACCAGACA-ATGTGTAACCTTACCCGCC 444
||||| |||| |||||| |||||||||||||||||||||| | | |||||||||||||||
Sbjct 461 TTTGCGGAAAAGCGTGTCTCTATAATCCCACCACCAGACAGA-GCGTAACCTTACCCGCC 519
Query 445 GTCCAATCCAACATTTTTGCT-CAA-GAAGATTATCATAAGAGTGTCCTCTACTTTTTAG 502
|| ||| ||||||||||| | ||| ||| | | ||| ||| |||||||||| || |
Sbjct 520 ATCAAATTCAACATTTTTG-TCCAAGGAA-ACGAACAT---AGTCTCCTCTACTTCTTGG 574
Query 503 GACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTG---CAGT-ATCCTCA 558
| ||||||||||||||||||||||||||||||||||||||| ||| || | |||||||
Sbjct 575 GGCACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTTTTGTGTCA-TCATCCTCA 633
Query 559 AAAAGGTTT--AAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCCGGAGGTT 616
|| | ||| || | ||||| ||| |||||||||||||||||||| ||| |||||||
Sbjct 634 CAA-GATTTGGAA-ACGATAATCTCGGAGCATTGGGTCTTCGTACTGGAAGTTGGAGGTT 691
Query 617 CGTGGAAAAGAATTGAGTTTGATCTACCTCATTGTCCTGC-ACGA-CTAGGACTGTGCAT 674
| |||||||||||||||||||||| ||||||| |||| | | || || |||||||||||
Sbjct 692 CTTGGAAAAGAATTGAGTTTGATCAACCTCATACTCCTACGA-GATCT-GGACTGTGCAT 749
Query 675 CAACGGAGTCATATATTTT-TTGGCTTCCGCTTGTATGTCT-AGCGATATCCTTGTCAGT 732
| ||||| ||||||| | ||| ||| | || |||||| | || |||||| ||||||
Sbjct 750 CGGTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTTTCAG-GATATCGTTGTCACC 807
Query 733 TTTGATGTTATGTCTGAAGAGTTCAA-ATGGATCCAAG-GACCTCCTGTCGC-GTCTGCA 789
||||| |||| ||||||||| || || || ||||||| | |||| ||| | |||||||
Sbjct 808 TTTGACGTTAGGTCTGAAGAATTTAACATT-ATCCAAGCG-CCTCTTGT-GTTGTCTGCA 864
Query 790 T-T-TA-AGC-C-CATGGGTTTTATAGAGTATCT-TGGAAAACCATCTGTTTTTGATCAT 843
| | | | | | | ||| |||||||||||| | ||| |||||| || ||||| |||||
Sbjct 865 TATGTTGA-CTCTC-TGGATTTTATAGAGTA-CGGTGGGAAACCAGCTATTTTTTATCAT 921
Query 844 TCCCA-TCTTAAACGCAAA-GGTTCCGTGGACTTATGGGTCTTGGAAGATGCTGGAAAAT 901
| | ||||||| | ||| |||| || |||||||||||||||||| |||||||||| |
Sbjct 922 ACT-AGTCTTAAA-GAAAACGGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAAACT 979
Query 902 GGTCGAAGAAA-TCCCTG-GTTTTGCAGCCTTGTCAGATGCATTTAGTTGATAA-GAAAT 958
|||||| || | | || |||| ||||||||||||| |||||||||||||||| || ||
Sbjct 980 GGTCGAGGACAGTTT-TGAGTTT-GCAGCCTTGTCAGCTGCATTTAGTTGATAACGACAT 1037
Query 959 TATCATTCACGGTTA 973
| |||| ||| |||
Sbjct 1038 TC-CATTGACG-TTA 1050
Score = 669 bits (362), Expect = 0.0
Identities = 426/457 (93%), Gaps = 3/457 (1%)
Strand=Plus/Plus
Query 974 AAGGAAATGATCATAGTGTCCTCTACTTCTTGGGACACGATCCTGTTCTTGATCAATACA 1033
||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 542 AAGGAAACGAACATAGTCTCCTCTACTTCTTGGGGCACGATCCTGTTCTTGATCAATACA 601
Query 1034 AAGTAGTTTGTAATTTTGTGTCATCATCTTCACAAGATTTGGACATGATAAACTTGGAGC 1093
|||||||||| | ||||||||||||||| |||||||||||||| | ||||| || |||||
Sbjct 602 AAGTAGTTTGCACTTTTGTGTCATCATCCTCACAAGATTTGGAAACGATAATCTCGGAGC 661
Query 1094 ATTGGGTCTTCGTACTAGAAGTTGGAGATTCTTGGAAAAGAATAGAGTTTGATCAACCTC 1153
|||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 662 ATTGGGTCTTCGTACTGGAAGTTGGAGGTTCTTGGAAAAGAATTGAGTTTGATCAACCTC 721
Query 1154 ATATAT-CTACAAGACCTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACT 1212
||| | |||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATA-CTCCTACGAGATCTGGACTGTGCATCGGTGGAGTTATATATTATCTTGCTTTCACT 780
Query 1213 AGTATGTTTGAGGATATCGTTGTCAGCTTTGACGTTAGATCTGAAGAATTTAACATAATC 1272
||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 781 AGTATGTTTCAGGATATCGTTGTCACCTTTGACGTTAGGTCTGAAGAATTTAACATTATC 840
Query 1273 CAAGCGCCTCTTGTGGTGTCTGCATATGTTGGCTCTCTGGGTTTTATAGAGTATGGTGGG 1332
||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||||
Sbjct 841 CAAGCGCCTCTTGTGTTGTCTGCATATGTTGACTCTCTGGATTTTATAGAGTACGGTGGG 900
Query 1333 AAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTGGACTTATGGGTC 1392
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 901 AAACCAGCTATTTTTTATCATACTAGTCTTAAAGAAAACGGTTTGGTAGACTTATGGGTC 960
Query 1393 TTGGAAA-TGCTGGAAACTGGTCGAGGAAAGCTTTGA 1428
||||||| |||||||||||||||||||| || |||||
Sbjct 961 TTGGAAAATGCTGGAAACTGGTCGAGGACAGTTTTGA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70381164090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5