BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358470
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62660.1 | Symbols: | F-box and associated interaction doma... 1260 0.0
AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-... 878 0.0
AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:2515... 379 4e-104
> AT5G62660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:25156326-25157465 REVERSE LENGTH=1140
Length=1140
Score = 1260 bits (682), Expect = 0.0
Identities = 930/1048 (89%), Gaps = 23/1048 (2%)
Strand=Plus/Plus
Query 625 aagaagaggtcgtcaaa---gacgataagaagaggaagaagaagaagaca-aagaggaga 680
|||| |||||| ||||| || | | ||||||||||||| ||||||| | |||| |||
Sbjct 40 AAGACGAGGTCTTCAAAGGTGATGTTGAGAAGAGGAAGAAAAAGAAGA-AGAAGAATAGA 98
Query 681 aTAtttttttGTGGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATT 740
| | ||| || || |||||||| ||| | ||||||||||||||||||||||||| |||
Sbjct 99 AGACGCTTTGGTCGCGCCGGAGATCCCTCTCGATCTACTGATCGAGATTCTGACTAAATT 158
Query 741 GCCTGCTAAATCGCTTTTGAGGTTCAAGTGCATCTCAAAGCTATGGTCTTCTCTTATCTG 800
|||||||||||| ||| |||| ||||||||| |||||||| ||||||||||||||||| |
Sbjct 159 GCCTGCTAAATCTCTTATGAGATTCAAGTGCGTCTCAAAGTTATGGTCTTCTCTTATCCG 218
Query 801 TTCCCGATTTTTTAGCAATC-GTTATCATACGGTCGCATCCCCACTGCGACCACCTCGTC 859
|||||||||||||||||| | |||||| ||||||| | | |||| ||||||||||||||
Sbjct 219 TTCCCGATTTTTTAGCAA-CTGTTATCTTACGGTCAAAACTCCACGGCGACCACCTCGTC 277
Query 860 TATACATGAGTTTGGT-GTACCACCTCGTGTGTAATTCAATGGA-GGTTTGCCACAACCA 917
|||||||||||||||| | |||||||| ||||||||||| | || |||||| | | || |
Sbjct 278 TATACATGAGTTTGGTAG-ACCACCTCTTGTGTAATTCACT-GATGGTTTG-C-C-ACTA 332
Query 918 CCCCCGTGAGTCTGTATTGCTGTCATCTTCTAGTAGCAGTGCTGAGTCTTTGGAACAAGA 977
||| ||||||||||| ||||| || |||||||||||||||||||||||||||||| |
Sbjct 333 CCCATGTGAGTCTGTACTGCTG---TCGTCTAGTAGCAGTGCTGAGTCTTTGGAACAAAA 389
Query 978 TTTGACACTTGCAGGGATGGGAGGACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATA 1037
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TTTGACAATTGCAGGGATGGGAGGACGCAACATGGTGGTTCTTCGCGGCTTGATTCTATA 449
Query 1038 CAATGTTTGTAGAAAGGCGTGTATCTATAATCCCACCACCACACAAAGTGTAACCTTACC 1097
| |||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 450 CGTTGTTTGCAGAACGGCGTCTATCTATAATCCCACCACCAGACAAAGTGTAACCTTACC 509
Query 1098 TGCTGTCAAATCCAACATCTTTGCTCACGAATACTACAATAAGAGTGTCCTCTACTTTTT 1157
||||||||||||||||||| ||||||| ||| | || || ||| |||||||||||||
Sbjct 510 TGCTGTCAAATCCAACATCCTTGCTCAAAAATCCCACTGGAATAGTCTCCTCTACTTTTT 569
Query 1158 TGGACACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTGCAGTATCCTCaaa 1217
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 570 CGGATACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTGCACTATTCTCAAA 629
Query 1218 aaaaG-TTAAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCTGGAGGTTCGT 1276
|| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 630 AAG-GCTTAAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCAGGAGGTTCGT 688
Query 1277 GGAAAAGAATTGAGTTCGATCAACCTCATCTCCCTACGAGACTAGGATTGTGCATCAAGG 1336
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 689 GGAAAAGAATTGAATTCGATCAACCTCATCTCCCTACGAGACTAGGATTGTGCGTCAATG 748
Query 1337 GAGTTATATATTATTTGGCTTCCACTTGTAAGCGTCGCGATATCGTTGTCAGTTTTGATG 1396
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 749 GAGTTATATATTATTTGGCTTCCACTTGGAAGCGTCGTGATATCGTTGTCAGTTTTGACG 808
Query 1397 TTCGGTCTGAAGAGTTCAGTATGATCCAAGGACCTCCTGTGGTGCCTGCGTATGGTGAGC 1456
|||||||||||||||||||||||||||||||||||| | |||| |||| | | ||||
Sbjct 809 TTCGGTCTGAAGAGTTCAGTATGATCCAAGGACCTCTTAAGGTGTCTGCATTTTCTGAGT 868
Query 1457 CTGTGGGATTTATAGAGTATGGTGGAAAACCAGCTGTTGTTGATCATACCATTTTGGAAC 1516
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||
Sbjct 869 CTGTGGGATTTATAGAGTATGGTGGAAAACCAGCTGTTTTTGATTATACCATGATGAAAC 928
Query 1517 AAACAGGTTTAGTGGACTTATGGGTTTTGGAAGATGCTGGAAAATGGTCGAGGAAATCTC 1576
|||| ||||| |||||||| ||||| ||||||||||||||||||||||| ||||||||||
Sbjct 929 AAACGGGTTTGGTGGACTTGTGGGTCTTGGAAGATGCTGGAAAATGGTCAAGGAAATCTC 988
Query 1577 TCGTTTTGCAGCCTTGTCAGATGCACTTAGTAGATAACAACATTCCA-TTGA-TGGTGCA 1634
| ||||||||||||||||||||||| ||||| ||||| ||||| | || | || || |
Sbjct 989 TGGTTTTGCAGCCTTGTCAGATGCATTTAGTCGATAATGACATTG-AGTTTAATG-TGGA 1046
Query 1635 AGGTACAACTCAAAACGGCGAGGTTATC 1662
||||||||||||||||||||||||||||
Sbjct 1047 AGGTACAACTCAAAACGGCGAGGTTATC 1074
> AT5G62510.1 | Symbols: | F-box family protein | chr5:25095373-25096635
REVERSE LENGTH=1263
Length=1263
Score = 878 bits (475), Expect = 0.0
Identities = 916/1116 (82%), Gaps = 81/1116 (7%)
Strand=Plus/Plus
Query 586 ATG-GTTATGTCTCTAGCTCTGATTGCGTCTATGCATTGgaagaagaggtcgtcaaagac 644
||| ||| ||||| ||||||||||| | ||| | || |||||||||||||| |||||| |
Sbjct 1 ATGCGTT-TGTCTGTAGCTCTGATTTCATCTTTTCAATGGAAGAAGAGGTCTTCAAAGGC 59
Query 645 ga-ta--ag-a-a-g-ag-----gaagaagaagaagacaaagaggagaaTAtttttttGT 692
|| || || | | | || |||||||||||||||||||||||||| ||||||||||
Sbjct 60 GATTATGAGAAGAGGAAGAAAAAGAAGAAGAAGAAGACAAAGAGGAGAAGATTTTTTTGT 119
Query 693 GGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCTGC-TAAAT 751
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 120 GGCACCGGAGATTCCTTTGGATCTACTGATCGAGATTCTGACTAGATTGCCT-CATAAAT 178
Query 752 CGCTTTTGAGGTTCAAGTGCATCTCAAAGCTA-TGGTCTTCTCTTATCTGTTCCCGATTT 810
||||| |||||||||||||| | ||||||| | ||||||||||||||| |||||||||||
Sbjct 179 CGCTTATGAGGTTCAAGTGCGTTTCAAAGC-AGTGGTCTTCTCTTATCCGTTCCCGATTT 237
Query 811 TTTAGCAATCGTTATCATACGGTCGCATCCCCACTGCGACCACCTCGTCTATACATGAGT 870
|||||||| ||||||| |||||| ||||| ||||||||||||| |||||||||||| |||
Sbjct 238 TTTAGCAACCGTTATCTTACGGTTGCATCTCCACTGCGACCACATCGTCTATACATTAGT 297
Query 871 TTGGTGTACCACCTCGTGTGTAATTCAATGGAGGTTTGCCACAACCACCCCCGTGAGTCT 930
|||||| ||||| ||||| | ||||| |||||| ||||||| || ||| || |||||
Sbjct 298 TTGGTGGACCACAA-GTGTG-A-TTCAAGGGAGGTCTGCCACAGCC-CCCGCG--AGTCT 351
Query 931 GTATTGCTGTCAT-CTTCTAGTAGCAGTGCTGAGTCTTTGGAACAAGATTTGAC-ACT-T 987
||| |||| |||| || | | | || | || ||| || | | ||||||||||| || |
Sbjct 352 GTACTGCTATCATTCT-C-A-TCGCCTT-CT-AGT-TTCG-ACCAAGATTTGACGACCAT 404
Query 988 GCA-GGGATGGGAGGACG-CAACATGGTGGTTCTTCGCGGCTTGATTCTATACAATGTTT 1045
||| ||||||||||||| || |||||| |||||| ||||||||| |||||| |||||
Sbjct 405 GCAAGGGATGGGAGGACTACAT-ATGGTGACTCTTCGTGGCTTGATTTTATACATTGTTT 463
Query 1046 GTAGAAAGGCGTGTATCTATAATCCCACCACCACACAAAGTGTAACCTTACCTGCTGTCA 1105
| |||| |||||| |||||||||||||||||| ||| || ||||||||||| || |||
Sbjct 464 GCGGAAAAGCGTGTCTCTATAATCCCACCACCAGACAGAGCGTAACCTTACCCGCCATCA 523
Query 1106 AATCCAACATCTTTGCTC-ACG-AATACTA-CAATAAGAGTGTCCTCTACTTTTTTGGAC 1162
||| |||||| |||| || | | || || | || || | | |||||||||| || || |
Sbjct 524 AATTCAACATTTTTG-TCCAAGGAA-ACGAACA-TA-G--TCTCCTCTACTTCTTGGGGC 577
Query 1163 ACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTGTTG---CAGT-ATCCTCaaaa 1218
|||||||||||||||||||||||||||||||||||||| ||| || | ||||||| ||
Sbjct 578 ACGATCCTGTTCTTGATCAATACAAAGTAGTTTGCACTTTTGTGTCA-TCATCCTCACAA 636
Query 1219 aaaGTT--AAGAGGATAACCTCAGAGCATTGGGTCTTCGTACTAGAACCTGGAGGTTCGT 1276
| || || | ||||| ||| |||||||||||||||||||| ||| ||||||||| |
Sbjct 637 GAT-TTGGAA-ACGATAATCTCGGAGCATTGGGTCTTCGTACTGGAAGTTGGAGGTTCTT 694
Query 1277 GGAAAAGAATTGAGTTCGATCAACCTCAT-CTCCCTACGAGA-CTAGGATTGTGCATCAA 1334
|||||||||||||||| |||||||||||| |||| ||||||| || ||| ||||||||
Sbjct 695 GGAAAAGAATTGAGTTTGATCAACCTCATACTCC-TACGAGATCT-GGACTGTGCATCG- 751
Query 1335 G-GGAGTTATATATTAT-TTGGCTTCCACTTGTAAGCGTC-GCGATATCGTTGTCAGTTT 1391
| ||||||||||||||| ||| ||| |||| ||| | || | ||||||||||||| ||
Sbjct 752 GTGGAGTTATATATTATCTTG-CTTTCACTAGTATGTTTCAG-GATATCGTTGTCACCTT 809
Query 1392 TGATGTTCGGTCTGAAGAGTTCAGTATGATCCAAG-GACCTCCTGTGGTGCCTGCGTATG 1450
||| ||| |||||||||| || | || ||||||| | |||| |||| || |||| ||||
Sbjct 810 TGACGTTAGGTCTGAAGAATTTAACATTATCCAAGCG-CCTCTTGTGTTGTCTGCATATG 868
Query 1451 GTGAGC-CTGTGGGATTT-ATAGAGTATGGTGGAAAACCAGCTGTTGTTGATCATACCAT 1508
||| | || ||| |||| |||||||| ||||| ||||||||| || || ||||||| |
Sbjct 869 TTGA-CTCTCTGG-ATTTTATAGAGTACGGTGGGAAACCAGCTATTTTTTATCATACTAG 926
Query 1509 T-TTGGAACAAA-CAGGTTTAGTGGACTTATGGGTTTTGGAAGATGCTGGAAAATGGTCG 1566
| || || ||| | ||||| || ||||||||||| |||||| |||||||||| ||||||
Sbjct 927 TCTTA-AAGAAAAC-GGTTTGGTAGACTTATGGGTCTTGGAAAATGCTGGAAACTGGTCG 984
Query 1567 AGGAAA-TCTCTC-GTTTTGCAGCCTTGTCAGATGCACTTAGTAGATAACAACATTCCAT 1624
|||| | | | | |||| ||||||||||||| |||| ||||| |||||| |||||||||
Sbjct 985 AGGACAGTTT-TGAGTTT-GCAGCCTTGTCAGCTGCATTTAGTTGATAACGACATTCCAT 1042
Query 1625 TGATGGT-GCAAGGTACAACTCAAAACGGCGAGGTT 1659
||| | | | | | |||||||||||||||||||||
Sbjct 1043 TGACGTTAGTA-GACACAACTCAAAACGGCGAGGTT 1077
> AT5G62650.1 | Symbols: | Tic22-like family protein | chr5:25152625-25155935
REVERSE LENGTH=1901
Length=1901
Score = 379 bits (205), Expect = 4e-104
Identities = 219/225 (97%), Gaps = 3/225 (1%)
Strand=Plus/Plus
Query 1 ATGGCCCTGTGGTTTCGTTTTTTCATGGATCTTGGCGATGCAGTTTCATATGTTAAAAAA 60
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 482 ATGGCCCTGT-GTTCCGTTTTTTCATGGATCTTGGTGATGCAGTTTCATATGTTAAAAAA 540
Query 61 CTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGATTTGGCATATGAGCATTTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTAAATATTCCAAGTGGAGTGGTTGGGGCTTGTCGACTTGATTTGGCATATGAGCATTTC 600
Query 121 AAGGAGAAGCCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGGTGAAGGCTGCCAAC 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAGGAGAAACCTCACTTATTTCAGTTTGTTCCAAATGAGAGACAGGTGAAGGCTGCCAAC 660
Query 181 AAACTTCTCAAGTCAATGCCACAGAATGGTAATAA-ACAAAAGGT 224
|||||||||||||||||||||||||||||||| || |||||||||
Sbjct 661 AAACTTCTCAAGTCAATGCCACAGAATGGTAA-AACACAAAAGGT 704
Score = 130 bits (70), Expect = 5e-29
Identities = 82/88 (93%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 372 GATTTCATCTCTCATCTCCGATGGGAAACGCGGTGGACCGGCCTTCGTCGGCCAGGTCTT 431
||| |||||||||| |||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 294 GATATCATCTCTCAGCTCCGATGGGAAACGCGGTGGACCTGCTTTCGTCGGTCAGGTGTT 353
Query 432 TAGTATGTGTGACCTTACTGGGACTGGT 459
||||||||||||||||||||||||||||
Sbjct 354 TAGTATGTGTGACCTTACTGGGACTGGT 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5