BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358487
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62800.1 | Symbols: | Protein with RING/U-box and TRAF-like... 1190 0.0
> AT5G62800.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:25218663-25219967 FORWARD LENGTH=1047
Length=1047
Score = 1190 bits (644), Expect = 0.0
Identities = 777/841 (92%), Gaps = 10/841 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGGTAGCAACTCTCACTCGCATATTCAATTATC-AAAAGAAAAAATTTCGCACCG 59
||||||| ||||||||||||| |||| | |||| ||| ||||| ||||| || ||||
Sbjct 1 ATGGAGGATAGCAACTCTCACCCGCAAAATCAAACATCAAAAAG-AAAAAGCTCTCACCC 59
Query 60 GCAAAAGAAGCAACGTATGGAGAAGAATGAAACACGATCGGCTAAGTTGTTGGATCTAGA 119
|||||||||||||||||| | | |||||||||||||||||||||||||||||||||| ||
Sbjct 60 GCAAAAGAAGCAACGTAT-G-G-AGAATGAAACACGATCGGCTAAGTTGTTGGATCTTGA 116
Query 120 TGTTCTTGACTGTCCGATTTGCTTCGAGCCGCTCACTATTCCTACCTTTCAGTGTGATGA 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TGTTCTTGACTGTCCGGTTTGCTTCGAGCCGCTCACTATTCCTACCTTTCAGTGTGATGA 176
Query 180 TGGACATCTAGTTTGCAGTTTTTGCTTTGCCAAAGTGAGTAGTAACAGGTGCCCTGGTCC 239
||||||| ||||||||| ||||||||||||||||||||||| | || ||||||||||||
Sbjct 177 TGGACATATAGTTTGCAATTTTTGCTTTGCCAAAGTGAGTA--A-CAAGTGCCCTGGTCC 233
Query 240 TGGGTGTGATTTACCCATTGGTAACAAGCGATGCTTCTCAATGGAGAAGGTTCTTGAATC 299
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||
Sbjct 234 TGGGTGTGATTTACCCATTGGTAATAAGCGATGCTTCGCAATGGAGAGGGTTCTCGAATC 293
Query 300 AGCCTTTGTTCCATGTCCAAATACTGAGTTTGGCTGCACAGAGAGTTTCTCTTATGGGAA 359
||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||| ||
Sbjct 294 AGCCTTTGTTCCATGTCAAAATACTGAGTTTGGCTGCACAAAAAGTGTCTCTTATGAAAA 353
Query 360 AGTGTCAAGTCATGAAAAGGAATGCAACTACTCTCAATGCTCTTGCCCCAACCTCGAATG 419
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 354 AGTGTCAAGTCACGAAAAGGAATGCAACTACTCTCAATGCTCTTGCCCTAACCTCGAATG 413
Query 420 CAATTACACTGGCTCATACAACATCATCTACGGTCACTTTATGCGTAGCCATCTTTACAA 479
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 414 CAATTACACTGGCTCATATAACATCATCTACGGTCACTTTATGCGTCGCCATCTTTACAA 473
Query 480 TAGTACGATATGTT-CCTCCATATGGGGATATTCCTCTGTTGATGTCCGGATAAACATCA 538
||||||||| ||| |||||| ||||||||||||| |||||||||| | ||||||||||
Sbjct 474 TAGTACGATC-GTTTCCTCCAAATGGGGATATTCCACTGTTGATGTTCTAATAAACATCA 532
Query 539 ATGAAAAGGTTTTAGTTCTCTGGGAATCTCTTCAGAAACTATTGTTTGTGGTCCAGTGTT 598
| |||||||||| ||||||||||||||||| ||||||||| |||||||| || |||||||
Sbjct 533 AAGAAAAGGTTTCAGTTCTCTGGGAATCTCGTCAGAAACTTTTGTTTGTAGTTCAGTGTT 592
Query 599 TCAGGGAGCGACATGGTGTTTATGTTACTGTTAGACGCATTGCACCATCTGCTTCAGAAT 658
||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 593 TCAAGGAGCGACATGGTGTTTATGTTACTGTTAGACGCATCGCACCACCTGCTTCAGAAT 652
Query 659 TAAAGAAGTTCTCGTATTGTCTTTCGTATAGTATAGATGGACACAATGTTACTTACGAAT 718
| ||||||||||||||| |||||||||||||||| || ||||| ||||||||||||||||
Sbjct 653 TCAAGAAGTTCTCGTATCGTCTTTCGTATAGTATCGACGGACATAATGTTACTTACGAAT 712
Query 719 CACCAGAAGTGAAGAGGCTTCTTGAAGTAAATTCTCAAATCCCTGATGAGAGTTTCATGT 778
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 713 CACCAGAAGTAAAGAGGCTTCTTGAAGTGAATTCTCAAATCCCTGATGACAGTTTCATGT 772
Query 779 TTGTCCCTAACTGTTTATTGCGTGGTGAAATGTTGGAGTTGAAGCTTGGCATCAAGAAGT 838
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 773 TTGTCCCTAACTGTTTACTGCATGGTGAAATGTTGGAGTTGAAGCTTGGCATCAAGAAGT 832
Query 839 T 839
|
Sbjct 833 T 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5