BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358506

Length=492
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G06613.1 | Symbols:  | transposable element gene | chr4:3726...   374    6e-103


> AT4G06613.1 | Symbols:  | transposable element gene | chr4:3726950-3728845 
FORWARD LENGTH=1896
Length=1896

 Score =  374 bits (202),  Expect = 6e-103
 Identities = 323/380 (85%), Gaps = 13/380 (3%)
 Strand=Plus/Plus

Query  16   GAAAACAACAATGATGACAATCTTGGTCAAGAGATTGATAGAGA-AGAAGATGGTCCACC  74
            |||||||||||||| |||| ||||||| ||||||||||| |||| | |||||||||||||
Sbjct  19   GAAAACAACAATGAAGACATTCTTGGTGAAGAGATTGATGGAGACA-AAGATGGTCCACC  77

Query  75   TCCCTCTTCAGTTGGAGGAAAAAGAACCAAATCTCAGAGATCAAGTTCTGGTTTTGCAGT  134
            ||||||||||||| |||| |||||||| ||||||||||||||||| ||| || || ||||
Sbjct  78   TCCCTCTTCAGTTAGAGGTAAAAGAACAAAATCTCAGAGATCAAGCTCTAGTATTCCAGT  137

Query  135  CAAACCGAGGAAAAGGCCAGCTCATAGAGCACCTGTGTGGAAGCATTTCGTTCAGCAAG-  193
            ||||| ||||||||||||||||||||||||   ||||||||||||||| | |||  ||| 
Sbjct  138  CAAACAGAGGAAAAGGCCAGCTCATAGAGCTGTTGTGTGGAAGCATTTTGATCA-AAAGC  196

Query  194  -AAGACAATCTGGCTTTAAGCAAGTGTAGATACTGTGGCCAAC--TGATTGGGTGCGACA  250
             || ||||||| || |||||||| ||| | || | ||   |||   |||||| |||||| 
Sbjct  197  CAA-ACAATCTAGCGTTAAGCAACTGTCGCTA-T-TGTAAAACAGAGATTGGATGCGACT  253

Query  251  CAGTCAAAACTGGAACAAGTGCTATGACCAAGCACATCAAAAGGTGCAAGTTATTCAAGA  310
            | || |||| |||||||||||  |||||||| ||||||||||||||||||||||||||||
Sbjct  254  CGGTTAAAAGTGGAACAAGTGAAATGACCAATCACATCAAAAGGTGCAAGTTATTCAAGA  313

Query  311  TGTATGA-GAG--TGATAGTCAGAAAGTGTTAGCTGGAGATAGCAGAGGTGTATTGACAG  367
            ||||||| |||  |||||  |||||| |  ||||||| |||||||| |||||| ||||||
Sbjct  314  TGTATGAAGAGAGTGATAAACAGAAAATCATAGCTGGTGATAGCAGTGGTGTAATGACAG  373

Query  368  CAATCAAGTATGATAAATGG  387
            ||||||||||| ||||||||
Sbjct  374  CAATCAAGTATAATAAATGG  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23459346649


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5