BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358511
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63010.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1450 0.0
> AT5G63010.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:25281714-25283176 FORWARD LENGTH=1266
Length=1266
Score = 1450 bits (785), Expect = 0.0
Identities = 950/1027 (93%), Gaps = 21/1027 (2%)
Strand=Plus/Plus
Query 1 ATGGACGCAGCACATTGCTATCTCGAAGGAAACGCCGACGCTGTAGAATTTTGTCCACAC 60
|||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 26 ATGGACGCAGCAGATTGCTATCTCGAAGGAAACGCCGACGCCGTAGAATTCTGTCCTCAC 85
Query 61 GAGCCTTACGCTAACTTGCTTGCAGCTTCTACTTACACACTCCAAGAAGGAGATTGTCCC 120
||| ||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 86 GAGTCTTACGCAAACTTGCTCGCAGCTTCGACTTATACACTTCAAGAAGGAGATTGTCCC 145
Query 121 TCTCGATCTGGGTCGGTGTATTTATTTGATGTCGGAGATGTGGAAGAGGTTGGCTTGAAT 180
|||||||| ||||| |||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 146 TCTCGATCCGGGTCAGTGTATCTATTTGATGTCGGAGATGTTGAAGATGTTGGCTTGAAT 205
Query 181 CTTATCCAGAAAGTTGATACCGCCGGAGTGTTT-GATATCCGGTGGAGTCGTGGTGGCGA 239
|||||||||||| |||| || || ||||| ||| ||||||||||||||||||||||||||
Sbjct 206 CTTATCCAGAAAATTGACACTGCTGGAGT-TTTCGATATCCGGTGGAGTCGTGGTGGCGA 264
Query 240 TGGAGGTGGAAACGTGGCTCTTGCTCAGGCTGATGCTGATGGATGCTTGAGAGTTTACAA 299
|||| ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 265 TGGA---GGAGACGTGGCGCTTGCTCAGGCTGATGCTGATGGATGCTTGATAGTTTACAA 321
Query 300 GATAGATGAGACTG-AAGTTAAAGGTTGTTCTCTGAGGGAAGTCTCTGGTGAAAA-AATC 357
|||||||||||||| ||| |||| | || ||||||| |||||||| || ||||| ||||
Sbjct 322 GATAGATGAGACTGAAAG-TAAA-G--GTACTCTGAGAGAAGTCTCCGG-GAAAAGAATC 376
Query 358 AGCTCATCAATGTGTCTTTGTTTGGATTGGGATCCATCATCAACATCAATCGTAGTTGGT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 377 AGCTCATCAATGTGTCTTTGTTTGGATTGGGATCCATCATCAACATCAATCGTTGTTGGT 436
Query 418 TTATCAGATGGCTCTGCTTCAGTTGTTTCATTCACTGATTCT-ATGCTAGAAACAGTCCA 476
||||||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||
Sbjct 437 TTATCAGATGGCTCTGCTTCAGTTGTTTCATTCACGGATTCTAAT-CTAGAAACAGTTCA 495
Query 477 AGAATGGAAAGGGCATGATTTTGAGGTTTGGACGGCCTCATTCGATCTCAACAATCCTAA 536
|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||
Sbjct 496 AGAATGGAAAGGGCATGACTTTGAGCTTTGGACGGCGTCATTCGATCTCAACAATCCTAA 555
Query 537 TTTGGTCTATACTGGATCAGACGATTGCAAGTTCAGCTGTTGGGATATCAGAGATAGTCC 596
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTTGGTCTATACTGGATCAGATGATTGCAAGTTCAGCTGTTGGGATATCAGAGATAGTCC 615
Query 597 GGCTGACAATCGGGTTTTTCAGAAATCCAAAGTGCATTCAATGGGTGTTTGCTGTATTTC 656
|||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||
Sbjct 616 GGCTGACAATCGGGTTTTTCAGAATTCCAAAGTTCATACAATGGGTGTTTGCTGTATTTC 675
Query 657 CCCAAATCCAAGTGATCCTTACTCTATATTCACCGGAAGTTATGATGAAACAC-TACGAG 715
|||| |||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 676 ATCAAACCCAAGTGATCCTTACTCTATATTCACCGGAAGTTATGATGAAAC-CTTAAGAG 734
Query 716 TGTGGGACACGAGGTCTGTTTCGAGACCTGTGAACGAAACATCGGTGTCTCTAGGCGGAG 775
| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||| || |
Sbjct 735 TTTGGGACACGAGGTCTGTTTCGAGACCTCTGAACGAAACATCAGTGTCTTTAGGTGGTG 794
Query 776 GAGTGTGGAGAATCAAGCACCATCCTTCTCTGAGCGGTGTTGTATTGGCGGCTTGTATGC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 GAGTGTGGAGAATCAAGCACCATCCTTCTCTGAGCGGTGTTGTATTGGCGGCTTGTATGC 854
Query 836 ATAATGGTTTTGCTGTAGCGAAGGTTAGTGATGGGAAAGGTGAAGTAATGGAGAATTATA 895
|||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 855 ATAACGGTTTTGCTTTAGCGAAGGTTAGTGATGGGAAAGGTGAAGTGTTGGAGAGTTATA 914
Query 896 ACAAGCA-CGAATCTCTTGCTTATGGAGCAGATTGGTACAGAGGGAAAGATCAGAAGCGA 954
||||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 915 ACAAGCATC-ATTCTCTTGCTTATGGAGCAGATTGGTACAGAGGGAAAGATCAGAAGCAA 973
Query 955 AGTGTTGTGGCAACTTGTTCGTTCTATGATCGGCTTCTTCGATTATGGATGCCAGA-AAC 1013
|| |||||||||||||||||||| ||||||||||||||||| |||||||||| || |||
Sbjct 974 AGCGTTGTGGCAACTTGTTCGTTTTATGATCGGCTTCTTCGGGTATGGATGCC-GATAAC 1032
Query 1014 TGCATTT 1020
|| ||||
Sbjct 1033 TG-ATTT 1038
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5