BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358516

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63063.1 | Symbols:  | Plant thionin family protein | chr5:2...   318    2e-86


> AT5G63063.1 | Symbols:  | Plant thionin family protein | chr5:25297420-25297650 
FORWARD LENGTH=231
Length=231

 Score =  318 bits (172),  Expect = 2e-86
 Identities = 195/205 (95%), Gaps = 6/205 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGAGCAAATGGAGTGTGGTGATGATGGTGTACTTCGTTTTTGTGGTGATTGCTGCC  60
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct  1    ATGGAGAGCAAATGGAGTGTGGTGATGATGGTGTACTTAGTTTTTGTGGTGATGGCTGCC  60

Query  61   ATTGGAGGAGAAGCAGAAGATCATCTTTCATGTGAAACGAAATGTGCAATCACCTGCAAA  120
            ||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATTGGAGGAGAAGCACAAG---ATCTTTCATGTGAAACGAAATGTGCAATCACCTGCAAA  117

Query  121  GATTCGATGTTCCCTAAAAAATGCTCAACCAAGTGTTTGGAAAGTTGTAGACG---TTAT  177
            ||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||
Sbjct  118  GATTCGATGTTCCCTAAAAAATGCTCATCCAAGTGTTTGGAAAGTTGTAGACGACATTAT  177

Query  178  CCACCTACTCAACTTCACACTCGCA  202
            |||||||||||||||||||||||||
Sbjct  178  CCACCTACTCAACTTCACACTCGCA  202



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17493176652


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5