BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358545
Length=2784
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63420.1 | Symbols: emb2746 | RNA-metabolising metallo-beta-... 3589 0.0
> AT5G63420.1 | Symbols: emb2746 | RNA-metabolising metallo-beta-lactamase
family protein | chr5:25400386-25405968 FORWARD
LENGTH=3026
Length=3026
Score = 3589 bits (1943), Expect = 0.0
Identities = 2096/2170 (97%), Gaps = 9/2170 (0%)
Strand=Plus/Plus
Query 1 ATGATGAAACCTGCTTCTTTGCAAGGTTTCTCCCCACA-G-G-CTTCCTCTATCTACTCC 57
||||||||||||||||||||||||||||||||| |||| | | | |||||||||||||||
Sbjct 130 ATGATGAAACCTGCTTCTTTGCAAGGTTTCTCCTCACATGCGTCCTCCTCTATCTACTCC 189
Query 58 GATGTTCTCAGGCCAGCTACTACTCCTTCGAAAATGGCAGCTTTTAGCGCTCTTTCGCTT 117
||||||| ||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 190 GATGTTCGCAGGCCAGCTACTACTCCTTCGAAAATGGCAGCTTTTAGTGCCCTCTCGCTT 249
Query 118 TGTCCCTACACTTTTACCTTCCGCCAAAGCTCTCGTATTAAGTCTACCGTTTCCTGTTCC 177
|||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 250 TGTCCCTATACTTTCACCTTCCGCCAAAGCTCTCGAATTAAGTCTACCGTTTCCTGTTCC 309
Query 178 GTCACTTCTGCTCCTGCTTCTGGTACCTCTCCATCCTCTAAGACACCGCGTAGAAGATCA 237
|||||||||||||||||||||||||| ||| ||||||||||||| || ||||||||||||
Sbjct 310 GTCACTTCTGCTCCTGCTTCTGGTACATCTTCATCCTCTAAGACGCCACGTAGAAGATCA 369
Query 238 GGTCGACCAGAAGGAGTTGGAAAAAGCATGGAGGACTCTGTAAAACGTAAAATGGAACAG 297
||||||| ||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 370 GGTCGACTAGAAGGAGTTGGAAAAAGCATGGAGGATTCGGTGAAACGTAAAATGGAACAG 429
Query 298 TTTTATGAAGGAACCGATGGACCGCCTCTCCGTGTTCTTCCCATAGGTGGCCTTGGTGAA 357
||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 430 TTTTATGAAGGAACCGATGGACCACCTCTCCGTATTCTTCCCATAGGAGGCCTTGGTGAA 489
Query 358 ATTGGAATGAACTGTATGCTTGTTGGAAACTATGATCGTTACATTTTAATCGACGCTGGT 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 490 ATTGGAATGAACTGTATGCTTGTTGGAAACTATGATCGTTACATTCTAATCGACGCTGGT 549
Query 418 ATAATGTTCCCTGATTATGATGAGCCT-GGAGTCCAGAAAATAATGCCAGACACAGGATT 476
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 550 ATAATGTTCCCTGATTATGATGAGCCTGGGA-TCCAGAAAATAATGCCAGACACAGGATT 608
Query 477 TATCAGACGCTGGAAACACAAAATTGAAGCTGTTGTTATAACGCATGGTCATGAAGATCA 536
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TATCAGACGATGGAAACACAAAATTGAAGCTGTTGTTATAACGCATGGTCATGAAGATCA 668
Query 537 CATTGGTGCGTTGCCTTGGGTTATCCCAGCATTGGACCCTAATACACCAATATTCGCATC 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CATTGGTGCGTTGCCTTGGGTTATCCCAGCATTGGACCCTAATACACCAATATTCGCATC 728
Query 597 ATCCTTCACCATGGAGCTTATAAAGAAGCGCTTGAAGGAACATGGAATCTTCGTTCAATC 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 729 ATCCTTCACCATGGAGCTTATAAAGAAGCGCTTGAAGGAGCATGGAATCTTCGTTCAATC 788
Query 657 TAGACTTAAGACATTTAGCACTCGAAGGAGATTTATGGCTGGACCATTTGAGATAGAGCC 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TAGACTTAAGACATTCAGCACTCGAAGGAGATTTATGGCTGGACCATTTGAGATAGAGCC 848
Query 717 CATTACAGTTACCCACTCTATTCCTGATTGTAGTGGTTTGTTCCTCCGTTGCGCTGATGG 776
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 849 CATTACAGTTACCCATTCTATTCCTGATTGTAGTGGTTTATTCCTCCGTTGCGCTGATGG 908
Query 777 TAATATTCTTCACACTGGAGATTGGAAGATTGATGAGGCACCATTGGATGGAAAAGTCTT 836
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 909 TAATATTCTTCACACTGGTGATTGGAAGATTGATGAAGCACCATTGGATGGAAAAGTCTT 968
Query 837 TGATCGTGAAGCTTTAGAGGAACTCTCAAAGGAAGGAGTCACGTTGATGATGAGTGACTC 896
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 969 TGATCGTGAAGCTTTAGAAGAACTCTCAAAGGAAGGAGTCACATTGATGATGAGTGACTC 1028
Query 897 AACAAATGTGTTGTCACCTGGAAGGACAATTAGTGAAAAGGTGGTAGCAGATGCTCTGGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 AACAAATGTGTTGTCACCTGGAAGGACAATTAGTGAAAAGGTGGTAGCAGATGCTCTGGT 1088
Query 957 AAGGAATGTAATGGCGGCCAAGGGAAGAGTAATCACAACTCAGTTTGCTTCTAATATACA 1016
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1089 AAGGAATGTAATGGCGGCCAAGGGAAGAGTAATCACAACTCAGTTTGCCTCTAATATACA 1148
Query 1017 CCGTTTGGGGAGTATAAAAGCTGCTGCTGATTTAACTGGTCGAAAGTTGGTCTTTGTTGG 1076
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1149 CCGTTTGGGAAGTATAAAAGCTGCTGCTGATATAACTGGTCGAAAGTTGGTCTTTGTTGG 1208
Query 1077 CATGTCGTTGAGGACATACCTAGAGGCAGCTTGGAGGGATGGAAAGGCTCCAATTGACCC 1136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CATGTCGTTGCGGACATACCTAGAGGCAGCTTGGAGGGATGGAAAGGCTCCAATTGACCC 1268
Query 1137 GTCAAGTCTGATAAAAGTCGAAGACATTGAAGCATATGCTCCTAAGGACTTGCTGATTGT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1269 GTCAAGTCTGATAAAAGTCGAAGACATTGAAGCATATGCTCCTAAGGACTTACTGATTGT 1328
Query 1197 CACAACTGGATCACAAGCAGAACCACGCGCTGCCCTGAATCTTGCATCATATGGGAGTAG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 CACAACTGGATCACAAGCAGAACCACGCGCTGCCCTGAATCTTGCATCATATGGGAGTAG 1388
Query 1257 TCACGCATTCAAACTTACCAAGGAAGACATAATTCTTTACTCTGCCAAGGTAATCCCAGG 1316
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 TCACGCATTCAAACTTACGAAGGAAGACATAATTCTTTACTCTGCCAAGGTAATCCCAGG 1448
Query 1317 CAATGAATCACGAGTAATGAAAATGATGAATCGGATAGCAGATATCGGGCCAAATATTAT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 CAATGAATCACGAGTAATGAAAATGATGAATCGGATAGCAGATATCGGGCCAAATATTAT 1508
Query 1377 CATGGGTAAGAATGAAATGCTGCACACATCTGGTCATGCCTACCGTGGAGAATTGGAAGA 1436
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1509 CATGGGTAAGAATGAAATGCTCCACACATCTGGTCATGCCTACCGTGGAGAATTGGAAGA 1568
Query 1437 GGTCCTTAAAATAGTGAAGCCGCAACATTTTCTTCCCATACATGGAGAACTTTTGTTTCT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 GGTCCTTAAAATAGTGAAGCCGCAACATTTTCTTCCCATACATGGAGAACTTTTGTTTCT 1628
Query 1497 TAAGGAGCATGAGTTGCTCGGGAAGTCTACTGGGATTAGACACACTACTGTTATAAAGAA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TAAGGAGCATGAGTTGCTCGGGAAGTCTACTGGGATTAGACACACTACTGTTATAAAGAA 1688
Query 1557 TGGAGAAATGCTTGGAGTTTCTCACCTGAGAAATAGAAGGGTTCTGTCCAATGGATTTAG 1616
||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1689 CGGAGAAATGCTAGGAGTTTCTCACCTGAGAAATAGAAGGGTTTTGTCTAATGGATTTAG 1748
Query 1617 CTCTCTTGGGAGGGAGAATTTGCAGTTAATGTATAGTGATGGCGATAAAGCATTTGGCAC 1676
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1749 CTCTCTTGGCAGGGAGAATTTGCAGTTAATGTATAGTGATGGTGATAAAGCATTTGGCAC 1808
Query 1677 ATCAAGTGAACTATGCATCGATGAACGACTCCGAATTTCTTCTGATGGCATTATAGTTTT 1736
|||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |
Sbjct 1809 ATCAAGCGAACTATGCATTGACGAACGACTTAGAATTTCTTCTGATGGCATTATAGTTCT 1868
Query 1737 GAGCATGGAAATCATGCGCCC-GGGAGTCTCAGAAAACACTTTGAAAGGAAAAATAAGAA 1795
||||||||| |||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 1869 GAGCATGGAGATCATGCGTCCAGGG-GTCTCAGAAAACACTTTGAAAGGAAAAATAAGAA 1927
Query 1796 TCACAACACGGTGCATGTGGCTTGACAAAGGAAGACTATTAGATGCACTTCACAAAGCAG 1855
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1928 TCACAACGCGGTGCATGTGGCTTGACAAAGGAAGACTTTTAGATGCACTTCACAAAGCAG 1987
Query 1856 CTCATGCTGCTCTATCAAGTTGTCCTGTGA-ATTGTCCCTTGTCTCATATGGAAAGAACA 1914
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 1988 CTCATGCTGCTCTATCAAGTTGTCCTGTGACAT-GTCCCTTGTCTCACATGGAAAGAACA 2046
Query 1915 GTCTCTGAAGTGCTGAGGAAGATTGTGAGGAAGTACAGTGGTAAAAGGCCTGAAGTCATT 1974
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2047 GTCTCCGAAGTCCTGAGGAAGATTGTAAGGAAGTACAGTGGTAAAAGGCCTGAAGTCATC 2106
Query 1975 GCTATAGCCACTGAGAATCCAATGGCAGTCCGTGCTGATGAGGTCAGTGCGAGACTGTCT 2034
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2107 GCTATAGCCACTGAGAATCCAATGGCTGTCCGAGCTGATGAGGTCAGTGCGAGACTGTCT 2166
Query 2035 GGTGATCCAAGTGTTGGTTCTGGAGTTGCAGCTTTAAGGAAAGTTGTTGAAGGAAATAAC 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2167 GGTGATCCAAGTGTTGGTTCTGGAGTTGCAGCTTTAAGGAAAGTTGTTGAAGGAAATGAC 2226
Query 2095 AAAAGAAGTCGACCGAAGAAAGCACCTTCACAAGAAGATTCCCCAAAAGAAGTAGATCGC 2154
||||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 2227 AAAAGAAGTCGGGCGAAGAAAGCACCTTCACAAGAAGCTTCCCCCAAAGAAGTAGATCGC 2286
Query 2155 ACTTTGGAAG 2164
||||||||||
Sbjct 2287 ACTTTGGAAG 2296
Score = 878 bits (475), Expect = 0.0
Identities = 545/578 (94%), Gaps = 8/578 (1%)
Strand=Plus/Plus
Query 2210 ATGATATTATTGATAGTGATGCAAGACTACTGGCTGAAGAAGAAACTGCAGCATCAACAT 2269
||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 2297 ATGATATCATTGATA--G-TGCAAGACTACTGGCTGAAGAAGAAACTGCGGCATCAACAT 2353
Query 2270 ACACAGAAGAAGTTGATATGCCCGTTGGGAGTTCTTCAGAAGATTCAGACGATTTTTGGA 2329
|||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 2354 ACACGGAAGAAGTTGATACGCCCGTTGGGAGTTCTTCAGAAGAGTCAGACGATTTTTGGA 2413
Query 2330 AATCATTCATCAATCCATCATCATCACCTTCACCGAGTGAAACTGAAAATGTGAATAAGG 2389
|||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||
Sbjct 2414 AATCATTCATCAATCCATCATCGTCACCTTCACCGAGTGAAACAGAAAATATGAATAAGG 2473
Query 2390 TAACTGATACGGAGCCTAAAACAGAGGATAAAGAAAGCAGCAGAGACGATGACG-ATCCA 2448
|| ||||||||||||||||| |||||| ||| |||| |||||||||||| || | || |
Sbjct 2474 TAGCTGATACGGAGCCTAAAGCAGAGGGTAAGGAAAACAGCAGAGACGACGATGAAT-TA 2532
Query 2449 TCTGATGCTTCAGATTCTGAAACCAAGTCATCACCAAAACGTGTGAGGAAGAACAAATGG 2508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2533 GCTGATGCTTCAGATTCTGAAACCAAGTCATCACCAAAACGTGTGAGGAAGAACAAATGG 2592
Query 2509 AAACCGGAGGAGATAAAGAAGCTAATCAGAATGCGAGGAGAGCTGCACAGTAGATTTCAA 2568
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2593 AAACCGGAGGAGATAAAGAAGGTAATCAGAATGCGAGGAGAGCTGCACAGTAGATTTCAA 2652
Query 2569 GTGGTGAAAGGTAGAATGGCATTGTGGGAAGAGATCTCTTCAAATCTATCAGCTGACGGA 2628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2653 GTGGTGAAAGGTAGAATGGCATTGTGGGAAGAGATCTCTTCAAATCTATCAGCTGAAGGA 2712
Query 2629 ATCAATCGAAGTCCGGGACAATGCAAATCTCTGTGGGCATCACTTATTCAGAAATACGAG 2688
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2713 ATCAATCGAAGCCCGGGACAATGCAAATCTCTCTGGGCATCACTTATTCAGAAATACGAG 2772
Query 2689 GAGTGCAAGGCTGATGAAAGAAGCAAGACGAGTTGGCCACATTTTGAGGATATGAACAAC 2748
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2773 GAGAGCAAGGCTGATGAGAGAAGCAAGACGAGTTGGCCACATTTTGAGGATATGAACAAC 2832
Query 2749 ATTTTGTCAGAGTT-GGACACATCTGCGTCT-AAGTAA 2784
|||||||||||| | || |||| |||||||| ||||||
Sbjct 2833 ATTTTGTCAGAGCTAGG-CACACCTGCGTCTTAAGTAA 2869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138310261851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5