BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358554
Length=1581
Score E
Sequences producing significant alignments: (Bits) Value
AT5G63520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box dom... 2326 0.0
> AT5G63520.1 | Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain,
Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494),
FIST domain, N-terminal (InterPro:IPR013702);
Has 137 Blast hits to 137 proteins in 56 species: Archae -
0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses
- 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:25426177-25429112
REVERSE LENGTH=1702
Length=1702
Score = 2326 bits (1259), Expect = 0.0
Identities = 1474/1575 (94%), Gaps = 25/1575 (2%)
Strand=Plus/Plus
Query 24 GAAGGAGATGACGACGACAAAGGGAAAGAGCGAGAACTGGAAGAAGATGAAAACAGATA- 82
||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 13 GAAGGAGAT---GACGACAAAGGGAAAGAGCGAGAACTCAAAGAAGATGAAGACAGATAT 69
Query 83 --C------GGTTCCAATCGCCGCCATGAACGAAGACCTTCTCCATAACATTCTTTTGAG 134
| |||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 70 GGCTGATATGGTTCCAATCGCCGCCATGAACGAAGACCTTCTCCACAACATTCTCTTGAG 129
Query 135 ATTGCCGGCGAAATCGTTTGCTTTCGCTTCCTGTGTTAACCGATCCTGGAGCAGCGTCTG 194
||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 130 ATTGCCGGCAAAATCGTTTGCTTTCGCTTCATGTGTTAACCGATTCTGGAGCAGCGTCTG 189
Query 195 CAATCGCATCCTCTCTCGCCCCAAAATGATCTCTGCTTTCTCTCGTAATCCTGATCAACT 254
|||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 190 CAATCGAATTCTCTCTCGCCCCAAAATGATATCTGCTTTCTCTCGTAATCCTGATCAACT 249
Query 255 CAGAGCTGGAGAAGAAGTACTTGATAAGGTTTTATCTGAGCCAATTCGACCAGATTTTGT 314
|||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 250 TAGAGCTGGAGAAGAAGTACTTGATAAGGTTTTGTCTGAGCCAATTCGACCACAGTTTGT 309
Query 315 AATCGCAAACATTACATGTGGAAACATGGAAGAAACTTTGACACTGATAACTGAAAGAGT 374
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 310 GATCGCAAACATTACATGTGGGAACATGGAAGAAACTTTGACACTGATAACAGAAAGAGT 369
Query 375 GGGATCAAGGGTTCCTATTATTGTATCTGTTGTTACTGGAATCTTAGGAAAGGAAGCATG 434
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GGGATCAAGGGTTCCTATCATTGTATCTGTTGTTACTGGAATCTTAGGAAAGGAAGCATG 429
Query 435 CAATGACAAGGCTGGAGAGGTCAAACAGCATTCCACTGGTGATGATGAATTGTTC-ATTG 493
||||||||||||||||||||||| || ||||||||| ||||||||||||||||| | ||
Sbjct 430 CAATGACAAGGCTGGAGAGGTCAGACTGCATTCCACAAGTGATGATGAATTGTTCGA-TG 488
Query 494 TTCCAAATTTTGCTATACTCTTGACGATTGGCTACTTACCAGGAATGAAAGTCGACGTTA 553
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 489 TTGCAAATTTTGCTATACTGTTGACGATTGGCTACTTACCAGGAATGAAAGTCGACATTA 548
Query 554 TTCCTGTTATTCAGGCTAAAGGGGAATC-GGAATCGGATATTGG-AGACAAATTTGTGAT 611
||||||| |||||||||||||||||||| || | | || | ||| |||||||||||||||
Sbjct 549 TTCCTGTAATTCAGGCTAAAGGGGAATCTGG-AGCAGA-AATGGAAGACAAATTTGTGAT 606
Query 612 GGATATTAGAAATTATGTGTCCATGGTTTCAGGTCATGCTGCTGCACCAGCATGTCTTAT 671
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 GGATATTAGAAATTATATGTCCATGGTTTCAGGTCATGCTGCTGCACCAGCATGTCTTAT 666
Query 672 ACTCTTTGGGGAGGATACTCATGCCACAGAACCTGTCCTTCACAAACTGGATTATGCCAT 731
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 667 ACTCTTTGCGGAGGATACTCATGCCACAGAACCTGTTCTTCACAAACTGGATTATGCCAT 726
Query 732 GCCTGCAGAAACTGTTATTGTGGGTGATCAAATTGGCGAGTTTTTACATAAACGTAGTAA 791
|||||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 727 GCCTGCTGAGACTGTTATTGTGGGTGGTCAAATTGGCGAGTTTTTACATAAACGTGGTAA 786
Query 792 TGAATCAAGAAATGTTCAGTTGCCGAAAGATGAT-TGCAGAGTTCTCGCAGGCTTAATAT 850
|||| |||||||||||||||||| |||||||||| | |||||||||||| ||||||||||
Sbjct 787 TGAACCAAGAAATGTTCAGTTGCAGAAAGATGATAT-CAGAGTTCTCGCTGGCTTAATAT 845
Query 851 TTGCAAGAGATAGACACAGACCCGCTCAGGCTGAAAGAATTCAGTTTGACACTGCAATAT 910
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 846 TTGCAAGAGATAGACACAGACCTGCTCAGGCTGAAAGAATTCAGTTTGACACTGCAATAT 905
Query 911 CAAGGGGAATGTCATCGGTTGATCTGAGGTACAAGGCGGCTAATGTCAATGTTAG--TC- 967
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 906 CAAATGGAATGTCATCGGTTGATCTGAGGTACAAGGCGGCTAATGTCAATGTTAGCCTCG 965
Query 968 GCCCTAGATGTCCTTCGACGCTTCTGACTGCCAAAAGAAGAGGAGAAGCAGAGGTTCTGG 1027
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 966 GCCCTAGTTGTCCTTCGACGCTTCTGACTGCCAAAAGAAGAGGAGAAGCAGAGGTTCTTG 1025
Query 1028 ATGGCGAGCAAATTCTAGATGACATAGATAATATTTTAGAAAACCATATCTGGGAGAATG 1087
||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1026 ATGGCGATCAAATTCTAGATGACATAGATAATATTCTAGAAAACTATATCTGGGAGAATG 1085
Query 1088 ATCCATATCTCGGAGTAATAAAACGAAGAAAATACTCAATTGGTTTGGAGGAGAAGCCAA 1147
|| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1086 ATTCATACCTCGGAGTAATAAAACGTAGAAAATACTCAATTGGTTTGGAGGAGAAGCCAA 1145
Query 1148 AAATCATGTCCTCCCTTGTATTTCATCAAGTGAATGGATCTGACGATCAGGATCTTTTAG 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 AAATCATGTCCTCCCTTGTATTTCATCAAGTGAATGGATCTGACGATCAGGATCTTTTAG 1205
Query 1208 TCGATGGTGCCGGAATCAAAACCGGCGACCAATTCCAAGTATACCTCCCTGATCTCAAAG 1267
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TTGATGGTGCCGGAATCAAAACCGGCGACCAATTCCAAGTATACCTCCCTGATCTCAAAG 1265
Query 1268 TGGCTGAAGCATCACTAAATGCTGTTACTTCTCAGCTTAGAAATCTCAAGTCTAAGGCAA 1327
||||||||||| ||||||||| |||| || |||| ||||||||||||||||||||| | |
Sbjct 1266 TGGCTGAAGCAGCACTAAATGATGTTTCTGCTCAACTTAGAAATCTCAAGTCTAAGCCGA 1325
Query 1328 ATAAACCGGAAATCGTTGGAGGTTTTGCTTTCGTCGGTAACAGTCGCGGTGACTTG-TTC 1386
||||||||||| ||||||||||||||||||||||||||| | |||||||||| || |||
Sbjct 1326 ATAAACCGGAAGTCGTTGGAGGTTTTGCTTTCGTCGGTAGCTGTCGCGGTGA-TTCCTTC 1384
Query 1387 TTTGGTCGTCCAGACGCAGACAGCTCACCGTTTTTAGAAAATTTCCCGGAGTTACGGTTT 1446
|||||| ||||| ||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 1385 TTTGGTTGTCCAAACGCAGACAGCTCACCGTTTTTAGAGAACTTCCCGGAGTTACCGTTT 1444
Query 1447 GGCGGTATATTCTGCGACAGTGAAATAGGACGCAGCTTATTCGTGGAGGAGGGAGAGGAA 1506
||||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||
Sbjct 1445 GGCGGTATATTCTGCGATGGTGAAATCGGACGCAGCTTAATCTTGGAGGAGGGAGAGGAA 1504
Query 1507 AAGAAAGAAGTGATCATCCGAAGATTTCTTCACGTTTATAGTTCGGTATATCTTATTGTC 1566
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 AAGAAAGAAGTGAGCATCCAAAGATTTCTTCACGTTTATAGTTCGGTATATCTTATTGTC 1564
Query 1567 TCGTATACTTCTTAA 1581
|||||||| ||||||
Sbjct 1565 TCGTATACATCTTAA 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78061847475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5