BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358655
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
AT5G09650.1 | Symbols: AtPPa6, PPa6 | pyrophosphorylase 6 | chr... 252 4e-66
> AT5G09650.1 | Symbols: AtPPa6, PPa6 | pyrophosphorylase 6 | chr5:2991149-2993213
REVERSE LENGTH=1181
Length=1181
Score = 252 bits (136), Expect = 4e-66
Identities = 190/215 (88%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 145 GAAACCCTTGATTA-CAGAGTTTTCCTT-CAAGATGGTTCTGGAAAGAAGGTTTCTCCAT 202
||| |||| ||||| | ||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 316 GAATCCCTAGATTATC-GAGTTTT-CTTCCTCGATGGTTCTGGAAAGAAGGTTTCTCCAT 373
Query 203 GGCATGATATACCATTG-CATTTAGGAGATGGAGTTTTTCA-CTTTATAGTGGAAATTCC 260
||||||||||||||||| | || ||| ||||||||||| || ||||||||| ||||| ||
Sbjct 374 GGCATGATATACCATTGACCTT-AGGCGATGGAGTTTT-CAACTTTATAGTTGAAATACC 431
Query 261 TAAAGAGTCGAGATCTAAGATGGAGGTTGCTACTGATGAAGCTTTCACTCCTATTAAGCA 320
||||||||| | | | || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 432 TAAAGAGTCAAAAGCAAAAATGGAGGTTGCTACTGATGAAGATTTCACTCCTATTAAGCA 491
Query 321 AGACACTAAGAAAGGGAAGCTCAGATATTATCCGT 355
|| |||||||| ||||||||||||||||||||||
Sbjct 492 GGATACTAAGAAGGGGAAGCTCAGATATTATCCGT 526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35063434606
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5