BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358710
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65120.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1378 0.0
> AT5G65120.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G10110.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:26012833-26014640 FORWARD LENGTH=1284
Length=1284
Score = 1378 bits (746), Expect = 0.0
Identities = 896/967 (93%), Gaps = 16/967 (2%)
Strand=Plus/Plus
Query 1 ATGACTGGAGA-TGGCTGCAGCTTAGTAGCGTCCAAGGAAACACGTCTCGCATTGTGTGA 59
||||||||||| ||| |||||| |||||| |||||||||||||||| |||||||||||||
Sbjct 195 ATGACTGGAGATTGG-TGCAGCCTAGTAGTGTCCAAGGAAACACGTGTCGCATTGTGTGA 253
Query 60 TATGACTAATGTTCCAAGCAAGAGAGGTCTTTCAGCTATTTTGGGTGATTTGCTTCTTAA 119
||||||||| |||||||||||||||| |||||||| |||||||| |||||||| |||||
Sbjct 254 TATGACTAACCTTCCAAGCAAGAGAGGGCTTTCAGCGATTTTGGGAGATTTGCTACTTAA 313
Query 120 ATCTGGAGATGATTCTGGTAAGAGCCTTGTTGCTCGTGAAGGCTCTGGGGTTAAGTTTTC 179
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 314 ATCTGGAGATGATTCTGGTAAGAGCCTTGCTGCTCGTGAAGGCTCCGGTGTTAAGTTTTC 373
Query 180 CAAGAGGTTGTGTTTAGTTGTTGACGACTTGGTCAAGGAGAGTACTAGGACTAGTGATAC 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 374 CAAGAGGTTGTGTTTAGTTGTTGACGACTTGGTCAAAGAGAGTACTAGGACTAGTGATAC 433
Query 240 AAATGAAGCTTCTTCTTCTGATGATAAAATTAGTAGTTTTGATTGTGATTCTGAGAATTT 299
|||||||||||||||||||| ||||| | | ||||| |||||||||||||||||||||
Sbjct 434 TAATGAAGCTTCTTCTTCTGAGGATAAGA-T--TAGTTATGATTGTGATTCTGAGAATTT 490
Query 300 CGATGTTAAAGAATCTCAGGGTGAAACCAATGCCGTAGATATTGGTGTTGAACCTAGTCA 359
||||| |||||||||||||||||||||||||||| |||||||| ||| |||||| ||
Sbjct 491 AGATGTCAAAGAATCTCAGGGTGAAACCAATGCCGGAGATATTGATGTGGAACCT--TC- 547
Query 360 TGGTGATGGTGATACTGTGAAGGAGACGTGTGAGAAAGACTCGAACATGGATGTCTGT-G 418
| | | |||||||||||| ||||||||||||||||||||||||||| |||| ||| |
Sbjct 548 ---TAAAGATGATACTGTGAAAGAGACGTGTGAGAAAGACTCGAACATGAATGTATGTGG 604
Query 419 CTAGTCAAACCGATGCTGTTACCAGTGAAGACTTAGCTATGACTCTGTTCAGTTGCAACA 478
| |||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||
Sbjct 605 C-AGTCAAACCGATGCTGTTACTAGTGAAGACTTAGCTATGACTCTGTTTAGTAGCAACA 663
Query 479 ATAGTGAAAGTGCGGGTTTGTTGGTGCCTAATTCTCAGACTATCAAATCGTTTAATATTA 538
||| |||||||| ||||||||| ||||||||| ||||| ||||||||||||||||||| |
Sbjct 664 ATAATGAAAGTGAGGGTTTGTTAGTGCCTAATCCTCAGGCTATCAAATCGTTTAATATGA 723
Query 539 ATAGATGTTCGAATGTTGACGCTATGGGAATTGTTGTTAATCACGATATGGAAGCTGACC 598
||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 724 ATAGATGTTCGAATGTTGACGGTATGGGAA---TTGTTAATCACCATATGGAAGCTGACG 780
Query 599 AAGAGCTTAAATCTTGCTCTTGTTCTTTTTGCCTGAAAGCTGCATATATCTGGTCAGATC 658
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 781 GCGAGCTTAAATCTTGCTCTTGTTCATTTTGCCTGACAGCTGCATATATCTGGTCAGATC 840
Query 659 TTCATTACCAGGATATCAAAGGTCGATTATCTGTGTTGAAGAAGAGCCAGAAAGAAGCTA 718
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTCACTACCAGGATATCAAAGGTCGATTATCTGTGTTGAAGAAGAGCCAGAAAGAAGCTA 900
Query 719 GTGGCTTGATCCAAAGGAATGATAGAGGAAAGCCAATGGATATTTATGGATCTGAAAACT 778
||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||
Sbjct 901 GTGGCTTGATCCAAAGGAACGATAGAGGAACGCCAACGGATATTTATGGATCTGAAAACT 960
Query 779 CCAATAACTCCACAAATACAGAAAATCCCATGGATCAATGGACATCTCTATTTCTTAACA 838
|||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 961 CCAACAACTCCACAAATACAGATAATCCCATGGAACAATGGACATCTCTATTTCGTAACA 1020
Query 839 TGGAAGGTATCTTGGCTCGTGAAAGCAACCACCTCCACAATAGCTTTGTAGCCATGAAAG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGAAGGTATCTTGGCTCGTGAAAGCAACCACCTCCACAATAGCTTTGTAGCCATGAAAG 1080
Query 899 AGTTGAGAGAAAATTGCAAGATTGATCTGGAGAGAGCAACGAAAACACCTCAACACAACA 958
||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||
Sbjct 1081 AGTTGAGAGAAAATTGCAAGATTGATCTGGAGAGAGCGACGAAAACATCTCAACAAAACA 1140
Query 959 ACACTTA 965
|||||||
Sbjct 1141 ACACTTA 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5