BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358729
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65280.1 | Symbols: GCL1 | GCR2-like 1 | chr5:26085973-26088... 1980 0.0
> AT5G65280.1 | Symbols: GCL1 | GCR2-like 1 | chr5:26085973-26088153
REVERSE LENGTH=1542
Length=1542
Score = 1980 bits (1072), Expect = 0.0
Identities = 1228/1305 (94%), Gaps = 3/1305 (0%)
Strand=Plus/Plus
Query 1 ATGTCGTCGTCGGCGGTGAAGTCTGTGGCTGAGCAGCGGATACGCAGCAACGATGGTGAC 60
||||||||||||| | || || ||| | || ||| ||| | || || |||||||| ||
Sbjct 85 ATGTCGTCGTCGG-TG-GATTTC-GTGACGGAACAGGGGAGATGCGGCGACGATGGTAAC 141
Query 61 GGCGCCGGAGAGACAGTAGAGAACGGCGAGCTTCATCACTTGCTTTCCGAACCGTCGGCT 120
|||||||||||||||||| |||| ||||| || |||| |||||||||||||||||||||
Sbjct 142 GGCGCCGGAGAGACAGTAAAGAATGGCGAAATTGATCATTTGCTTTCCGAACCGTCGGCT 201
Query 121 CCGACGATTTCTCTCCCTACGGAATCTTTCCTCAGAGCAGCGACGTTACTCAAGAACCAG 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CCGACTATTTCTCTCCCTACGGAATCTTTCCTCAGAGCAGCGACGTTACTCAAGAACCAG 261
Query 181 GTTGGGGAGGCCACGTGGAAAGGCGTTGTCGACGTTCTTGCCCCTGGTTCGAGTCCGGTG 240
|||| |||||||||||||||||| | |||||| | ||||||| |||||||| |||| |||
Sbjct 262 GTTGTGGAGGCCACGTGGAAAGGTGGTGTCGAAGCTCTTGCCTCTGGTTCGGGTCCAGTG 321
Query 241 CTGGATCCGACTGTGTACACAGGACTACTCGGCACAGCGTTCACCTGCTTGAAGTCGTAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 CTGGATCCGACTGTGTACACAGGACTACTCGGCACAGCGTTCACCTGCTTGAAGTCGTAC 381
Query 301 GAAGTCACGAGCAACCATCAAGATCTGCTAACTTGCGCTGAGATAATCGACACGTGTGCC 360
|| || ||| | |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 382 GAGGTAACGCGGAACCATCAAGATCTGCTAACTTGCGCAGAGATAATCGACACGTGTGCC 441
Query 361 AATGTTGCGCGTGCCACAACCAGGCACGTGACGTTTTTATGTGGAAGAGGAGGAGTTTAT 420
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 442 AACGTTGCGCGTGCCACAACCAGGCACGTGACATTTTTATGTGGAAGAGGAGGAGTTTGT 501
Query 421 GCGCTTGGTGCAATCGTAGCCAATTACAGAGGGGACCAATCAAAGCGTGACTTCTTCCTC 480
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ACGCTTGGTGCAATTGTAGCCAATTACAGAGGGGACCAATCAAAGCGTGACTTCTTCCTC 561
Query 481 GGTCTTTTTCTTGAGCTTGCAGAAGCGAGAGAGTTACCAGCAGGACCAGAGGAAGGAGGA 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 562 GGTCTTTTTCTTGAGCTTGCAGAAGAGAGAGAGTTACCAGCAGGACCAGAGGAAGGAGGA 621
Query 541 TTTGGGATGTCATATGACCTTCTCTATGGAAGAGCGGGTTTCCTTTGGGCTGCTTTGTTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 622 TTTGGGATGTCATATGACCTTCTCTATGGAAGAGCGGGTTTCCTTTGGGCTGCTCTGTTC 681
Query 601 CTGAACCGATATCTCGGCCAAGGCACTGTTCCTGACCATCTCCTATCACCCATTGTTGCA 660
|| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 682 CTAAACCGATATCTCGGCCAAGGAACTGTTCCTGACCATCTCTTATCACCCATTGTTGCA 741
Query 661 GCCATCTTAGCCGGTGGACGAGTTGGAGCTGCAGATCATGAAGCTTGTCCTCTGCTATAC 720
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 742 GCCATCTTAGCCGGTGGGCGAGTTGGAGCTGCAGATCATGAAGCTTGTCCTCTGTTATAC 801
Query 721 AGGTTTCACGGGACGCGATTTTGGGGTGCGGCTAATGGATTAGCTGGAATCTTGTATGTG 780
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 802 AGGTTTCACGGAACGCGATTTTGGGGTGCTGCGAATGGATTAGCTGGAATCTTGTATGTA 861
Query 781 TTGCTACATTTCCCACTATCGGAAGAGGATGTGAAGGATGTTCAAGGGACATTGAGGTAC 840
||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 862 TTGCTGCATTTTCCACTATCGGAAGAGGATGTTAAAGATGTTCAAGGGACATTGAGGTAT 921
Query 841 ATGATGAGTAATAGGTTTCCGAACAGCGGTAACTACCCGTGCAGCGAAGGGAATCCGAGA 900
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 922 ATGATGAGTAATAGGTTTCCGAACAGCGGAAACTACCCGTGCAGCGAAGGGAATCCGAGG 981
Query 901 GATAAGCTGGTCCAATGGGCTCATGGAGCAACCGGCATGGCCATTACTTTGGCTAAAGCA 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 GATAAGCTAGTCCAATGGGCTCATGGAGCAACCGGCATGGCCATTACTTTGGCTAAAGCA 1041
Query 961 TCTCAGGTGTTTCCCAAGCAAAGGGATTTCCGTGAAGCAGCCATTGAAGCAGGAGAAGTA 1020
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1042 TCTCAGGTGTTTCCCAAGGAAAGGGATTTCCGCGAAGCAGCCATTGAAGCAGGAGAAGTA 1101
Query 1021 GTGTGGAAGAGTGGCTTGGTGAAGAAGGTAGGTTTAGCTGATGGAGTTGCTGGTAACGCC 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1102 GTGTGGAAGAGTGGCTTGGTGAAGAAGGTAGGTTTAGCTGATGGAGTTGCTGGTAATGCC 1161
Query 1081 TATGCTTTCTTATCGCTTTATCGGTTAACCGGAGATGTTGTATACGAAGAGAGAGCGAAA 1140
|| ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1162 TACGCTTTCTTATCCCTTTATCGCTTAACCGGAGATGTTGTATATGAAGAGAGAGCAAAA 1221
Query 1141 GCGTTCGCTAGTTACTTGTGCCATGATGCAAAAGATCTCGTGAATATGACAAGGCAAGAA 1200
||||| || ||||||||||||| |||||| | ||| ||||||||||||||||| ||||||
Sbjct 1222 GCGTTTGCGAGTTACTTGTGCCGTGATGCGATAGAGCTCGTGAATATGACAAGCCAAGAA 1281
Query 1201 ACAGAACATGATTATTCGCTTTTCCGGGGACTAGCTGGACCAGTATGTCTCTGGTTCGAT 1260
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1282 ACAGAACATGATTATTCGCTATTCCGGGGACTAGCTGGACCAGTATGCCTCTGGTTCGAT 1341
Query 1261 CTTGTGTCTCCGGTAGATTCTAAGTTTCCTGGTTATGAGATATAA 1305
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1342 CTTGTGTCGCCGGTAGATTCTAAGTTTCCTGGTTATGAGATATAA 1386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5