BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358736
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65370.1 | Symbols: | ENTH/ANTH/VHS superfamily protein | c... 1197 0.0
> AT5G65370.1 | Symbols: | ENTH/ANTH/VHS superfamily protein |
chr5:26121708-26122749 FORWARD LENGTH=888
Length=888
Score = 1197 bits (648), Expect = 0.0
Identities = 814/894 (91%), Gaps = 12/894 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAAACTCA-CAACCTTGAATGGCATATTGAAAGACGAAGCGTCACAAATGAAACT 59
||||||||| | | | ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1 ATGGGAAAA-TTAGCGACCTTGAATGGCATATTGAAAGACGAAGCCTCACAGATGAAACT 59
Query 60 CAATGTGGTTCATTTGTGTAGCTCCGTGAATGCCAAAACCATTGACTTAGCTCTCTTGAA 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 60 CAATGTGGTTCATTTGTGTAGCTCCGTGAATGCCAAAACCATTGATTTAGCTCTCTTGAA 119
Query 120 AGCCACGTCTCATACCTCACACAATCCACCTTCGGACAAATACGTCACTTTCCTCCAATC 179
||||||||||||||||||| |||| || ||||| ||||||||||||||||| ||||||||
Sbjct 120 AGCCACGTCTCATACCTCAAACAACCCGCCTTCAGACAAATACGTCACTTTTCTCCAATC 179
Query 180 AACTATTGACACGTGCTACGGTCCTGAGACTGTCGCTGCCATCCTACATAGGCTCCGTTT 239
||||||||||||||| ||||||||||| ||||| | ||| ||| | |||||||| ||| |
Sbjct 180 AACTATTGACACGTGTTACGGTCCTGATACTGTTGATGCGATCTTGCATAGGCTGCGTGT 239
Query 240 AACGACGGACGCGTGCGTGGCTGCTAAATGTCTTATTCTTCTCCATAAGATGATTAAAAC 299
|||||||||| || ||||||||||||||||| |||||||||||||| ||| ||||| |
Sbjct 240 GACGACGGACGTATGTGTGGCTGCTAAATGTCTCATTCTTCTCCATAAAATGGTTAAATC 299
Query 300 AGAAAGTGGGTATAATGGAGAAGATAATCTTCGGGACTGTAATAGTCATCGTACTTTGAT 359
|||||||||||||||||||||||||| ||||||| || || || |||||||||||||||
Sbjct 300 AGAAAGTGGGTATAATGGAGAAGATAGTCTTCGGAACAATATTAATCATCGTACTTTGAT 359
Query 360 TTATAATCAAGGAGGGAGTAATCTTAAATTGAAT-AGTCTCAATGTAAATTCATCTCGTT 418
||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 360 TTATACTCAAGGAGGGAGTAATCTTAAATTGAATGA-TCTTAATGTAAATTCATCTCGTT 418
Query 419 TTACTAGAGAGTTGTCTCCATGGGTTCAATGGTACCAACAGTATCTAGATTGTTATTTAT 478
|||||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||||
Sbjct 419 TTACTAGAGAGTTGACTCCATGGGTTCAATGGTACAAACAATATCTAGATTGTTACTTAT 478
Query 479 CTATTGCGGAAGTTTTAGGCGTTACTCCAAACATAAAAGACAAAA-CAGAAGATAAGCGT 537
|||||||||| |||||||| ||||||||||||||||||| |||| | ||||||||||||
Sbjct 479 CTATTGCGGAGGTTTTAGGTATTACTCCAAACATAAAAGAAAAAAAC-GAAGATAAGCGT 537
Query 538 TTGGAGACTCAACGAGTCTCTTCTTACACAACTG-ATTGCATTTTCAAACAAATTGATTT 596
||||||||||| |||||||| |||||| ||| || |||||||| ||||||||||||||||
Sbjct 538 TTGGAGACTCAGCGAGTCTCGTCTTACCCAA-TGGATTGCATTCTCAAACAAATTGATTT 596
Query 597 CCTAGTAGATCTTTTCGAACATATAAGTGACAGGCCAAAAACTCCA-ACGTCGAAGCTGA 655
||||||||| || ||||||||||||||||| ||||||||| ||||| | |||||||||||
Sbjct 597 CCTAGTAGAACTATTCGAACATATAAGTGATAGGCCAAAAGCTCCACA-GTCGAAGCTGA 655
Query 656 ACAAAATCATTATTGAGATGATAGAACTAATGGTACAAGACTACTTCTCTGTCATAAAAT 715
|||||||| ||||||| |||| ||||||||||||||||||||||||||| | ||||| ||
Sbjct 656 ACAAAATCGTTATTGAAATGACAGAACTAATGGTACAAGACTACTTCTCCGCCATAAGAT 715
Query 716 TGATCAGGATAAGGTTTGAAGAATTGAACG-AGAGAGTAGCTAAATCTTACCAGTTGGTT 774
|||| |||||||| |||||||||||||||| | |||||||||||| || || ||||||||
Sbjct 716 TGATGAGGATAAGATTTGAAGAATTGAACGTA-AGAGTAGCTAAACCTAACGAGTTGGTT 774
Query 775 CCGGTTTTGGAGAGGCTTGAAAATTGCAAGGAGGGTTTGAACGAGTATTCTTGGCGAAGC 834
||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 775 CCGGTTTTGGAGAAGCTTGAAAACTGCAAGGAGGGTTTGAGCGAGTTTTCTTGGCGAAGC 834
Query 835 AAGTATTTGATTGAAGATTTTTGGTGTTTGGTATCGAAATTAAAAGATATGTAA 888
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 835 AAGTATTTGATTGCAGATTTTTGGTATTTGGTATCGAAATTAAAAGATATGTAA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43352068861
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5