BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358754
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65550.1 | Symbols: | UDP-Glycosyltransferase superfamily p... 957 0.0
> AT5G65550.1 | Symbols: | UDP-Glycosyltransferase superfamily
protein | chr5:26198304-26199827 REVERSE LENGTH=1524
Length=1524
Score = 957 bits (518), Expect = 0.0
Identities = 570/596 (96%), Gaps = 0/596 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGAGCCAAATCTGAAGCTTCATGTTGCAGTGTTCCCATGGTTAGCTTTAGGTCAC 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 18 ATGGCCGAGCCAAAACCGAAGCTTCATGTTGCAGTGTTCCCATGGTTAGCTTTAGGTCAC 77
Query 61 ATGATTCCTTACTTGCAACTCTCAAAGCTCATAGCAAGGAAAGGCCATACCGTCTCCTTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 78 ATGATTCCTTACTTGCAACTCTCAAAGCTCATAGCAAGGAAAGGCCATACTGTGTCCTTC 137
Query 121 ATCTCCACAGCTCGTAACATTTCACGTCTTCCCAATATATCCTCCGACCTTTCCGTGAAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 ATCTCCACAGCTCGTAACATTTCACGTCTTCCCAATATATCCTCCGACCTTTCCGTGAAT 197
Query 181 TTCGTGTCTTTGCCTTTAAGTCACACCGTCGACCACCTCCCAGAGAACGCTGAGGCCACC 240
||||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 198 TTCGTTTCTTTGCCGTTAAGTCAAACCGTCGACCATCTCCCAGAGAACGCTGAGGCCACC 257
Query 241 ACTGATGTCCCGGGGACACACATAGCCTATCTCAAGAAAGCGTTTGATGGGCTTTCTGAA 300
||||||||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 258 ACTGATGTCCCGGAGACTCACATAGCTTATCTGAAGAAAGCATTTGATGGGCTTTCTGAA 317
Query 301 GCTTTCTCAGAGTTTTTAGAAGCTTCCAAACCAAACTGGATAGTGTATGATATCTTGCAC 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GCTTTCACAGAGTTTTTAGAAGCTTCCAAACCAAACTGGATAGTGTATGATATCTTGCAC 377
Query 361 CATTGGGTCCCACCTATCGCTGAGAAGCTCGGCGTGAGACGAGCCATCTTCTGCACGTTC 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 CATTGGGTCCCGCCTATCGCTGAGAAGCTCGGCGTGAGACGAGCCATCTTCTGCACGTTC 437
Query 421 AACGCAGCTTCCATCGTCATCATCAGTGGGCCAGCATCAGTCATGGTTCATGGTCATGAC 480
||||||||||||||| |||||||| |||||||||||||||||||| |||| |||||||||
Sbjct 438 AACGCAGCTTCCATCATCATCATCGGTGGGCCAGCATCAGTCATGATTCAAGGTCATGAC 497
Query 481 CCTCGAAAGACCGCTGAAGATCTTACCGTGACTCCACCATGGGTCCCGTTTGAGACCAAC 540
||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 498 CCTCGAAAGACTGCTGAAGATCTTATCGTGCCTCCACCATGGGTCCCGTTTGAGACCAAC 557
Query 541 ATAGTTTACCGTCTCTTTGAGGCTAGGAGGATCGTGGAGTATCCCACGGCAGCTGT 596
|||||||||||||||||||| |||| ||||||| |||||||||||||||||| |||
Sbjct 558 ATAGTTTACCGTCTCTTTGAAGCTAAGAGGATCATGGAGTATCCCACGGCAGGTGT 613
Score = 154 bits (83), Expect = 1e-36
Identities = 181/222 (82%), Gaps = 31/222 (14%)
Strand=Plus/Plus
Query 665 GCTTGGAAATTTCAAGGAATGAGCGAGACGGGTTGTTCATGAGTGCTTCTG-T---G-G- 718
||||||| ||| |||||||||||||||||||| |||||| ||||||||||| | | |
Sbjct 1207 GCTTGGAGATTCCAAGGAATGAGCGAGACGGGCTGTTCACGAGTGCTTCTGTTGCAGAGA 1266
Query 719 ----CAGACAGGTTGTTGTGGAAGAAGAAGGAAAGATCTACAGAAACAATGCTGCATCT- 773
|||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1267 CAATCAGACATGTTGTTGTGGAAGAAGAAGGAAAGATCTACAGGAACAATGCTGCATCTC 1326
Query 774 --C----------A-----G--CAAGAGATTGCAAGATCATTATGCGGATGGTTTTATCG 814
| | | |||||||||||||||||| |||||||||||||||||||
Sbjct 1327 AGCAAAAGAAAATATTCGGGAACAAGAGATTGCAAGATCAGTATGCGGATGGTTTTATCG 1386
Query 815 AGTTTCTGGAGAATCCTAGAGCTGGAGTGTATAGCAAA-TAA 855
|||||||||||||||||| ||| |||||||| |||||| |||
Sbjct 1387 AGTTTCTGGAGAATCCTATAGCAGGAGTGTAGAGCAAAATAA 1428
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 590 CAGCTGTGGAAGGGCTTAGCTTTGGTGT 617
||||||||||||||||||||||||||||
Sbjct 1108 CAGCTGTGGAAGGGCTTAGCTTTGGTGT 1135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5