BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358775
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT5G43560.1 | Symbols: | TRAF-like superfamily protein | chr5:... 1094 0.0
> AT5G43560.1 | Symbols: | TRAF-like superfamily protein | chr5:17500542-17505646
FORWARD LENGTH=3789
Length=3789
Score = 1094 bits (592), Expect = 0.0
Identities = 708/761 (93%), Gaps = 20/761 (3%)
Strand=Plus/Plus
Query 204 ACATAGCCAAGCTTACAATCCTCAATCCTATAAACATGCCATAGTGGGTTTATCTGGTTT 263
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 2916 ACATAGCCAAGCTTACAATCCTCAATCCTACAAACATGCCATAGTGGGTTCATCTGGTTT 2975
Query 264 CACCCACTCAAGCACTCAATCAACG-GGAACAAGCACATTGCCGCCTTATTCACATCCGT 322
||||||| ||||| ||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 2976 CACCCACCCAAGCTCTCAATCGA-GTGGAACAAGCACATTGCCGCCTTATTCACATCCGT 3034
Query 323 CTCCTATCTCAGTATCAAGTCAGTCTGGTTTCCCTATCAATGTTGGCTCTTGGGATGTTT 382
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 CTCCTATCTCAGTATCAAATCAGTCTGGTTTCCCTATCAATGTTGGCTCTTGGGATGTTT 3094
Query 383 CTTCTGGTGGGCTCTTGTGGACCGGTGGTTCGAGTTCAAACAGAGAT---ACAACAACCA 439
||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 3095 CTTCTGGTGGGCTATTGTGGACCGGTGGTTCGAGTTCAACCAGAGATACAACAACAACCA 3154
Query 440 TCAGCGGGAATCATAAAACGAACACTTACAACACCCCCGTAGTAACTACCAGCATCAGGC 499
||||||||||||| ||||| |||||||||||| | |||||||||||||||||||||||||
Sbjct 3155 TCAGCGGGAATCACAAAACAAACACTTACAACGCACCCGTAGTAACTACCAGCATCAGGC 3214
Query 500 CTACTAATGTCCAGATTGGGAGAACGG--C---G-CAGATGACCGATGAGTTCCCTCACC 553
|||||||||| ||||| |||||||||| | | | |||||||||||||||||||||||
Sbjct 3215 CTACTAATGTTCAGATAGGGAGAACGGCACAGAGTCTGATGACCGATGAGTTCCCTCACC 3274
Query 554 TTGATATCATCAATGATCTGCTTGAAGACGAACACGGTTCAATGGACAGTAGTGTATACC 613
|||||||||||||||||||||||| ||||||||||||| ||||||| | ||| |||||||
Sbjct 3275 TTGATATCATCAATGATCTGCTTGCAGACGAACACGGTACAATGGATAATAGCGTATACC 3334
Query 614 ATGTACCACAACAGTTCAACAACCAGTACTCATACCATGGTGGTGCTGATCTCGGGATCT 673
||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 3335 GTGTACCACAACAGTTCAACAACCAGTACTCATATCATGGCGGTGCGGATCTCGGGATCT 3394
Query 674 CTGGCAGGTCTAGGAGTTACAGTGATGATGGATTTCACCAGTCTTACGGTGAATACATGC 733
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3395 CTAGCAGGTCTAGGAGTTACAGTGATGATGGATTTCACCAGTCTTACGGTGAATACATGC 3454
Query 734 CACATTCTGCTTCTTCTTCGCCATATGGTAATGGACAAACACAATCGCAATGGCAGATGG 793
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3455 CACATTCTGCTTCTTCCTCGCCATATGGTAATGGGCAAACACAATCGCAATGGCAGATGG 3514
Query 794 CAA-T--GGACTTGTCTTTACGGGCTATGAGGAACCAAGACGATGCATCAGCATCAGCAT 850
||| | ||| || ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 3515 CAAATATGGATTTCTCTTTACCGGCTATGAGGAACCAAGACGATGTATCAGCATCAGCA- 3573
Query 851 CAGCATCAGCTACTTACTCTTACTTTGATTTAGATTCATCAAACCCGAACTTGTCTGGAA 910
| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3574 -A-CA---GCTACTTACTCTTACTTTGATTTAGATTCATCAAACCCGAATTTGTCTGGAA 3628
Query 911 TCAACGGCTATAGAGACTTCAGGCCATCGAACGGACACTGA 951
||||||||||||| |||||||||||||||||||||||||||
Sbjct 3629 TCAACGGCTATAGGGACTTCAGGCCATCGAACGGACACTGA 3669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5