BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358793

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65925.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   573    5e-163


> AT5G65925.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G49820.1); 
Has 45 Blast hits to 45 proteins in 6 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:26369045-26369751 
FORWARD LENGTH=707
Length=707

 Score =  573 bits (310),  Expect = 5e-163
 Identities = 414/460 (90%), Gaps = 23/460 (5%)
 Strand=Plus/Plus

Query  1    ATGAAGAAAGAGAGCAACTTAGCAAGGTTGGTGAAATCTCCGGTTCGTTTCTTGATCATG  60
            ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  93   ATGAAGAAAGAAAGCAATTTAGCAAGGTTGGTGAAATCTCCGGTTCGTTTCTTGATCATG  152

Query  61   GCACGTGACGCTTACATACGCAGCATGACGTCATGTTCCGCCGGTTTCATCCGCGGTGGT  120
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  153  GCACGTGACGCTTACATACGTAGCATGACGTCATGCTCCGCCGGTTTCATCCGCGGTGGT  212

Query  121  GGTGGCTCCGGCGGTTTTGGCTTACCGGCCGGTAATTTCCAAATCTGCGAAGCACCGAGC  180
            ||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| | |
Sbjct  213  GGTGGCTCCGGCGCTTTTGGCTTACCACCCGGTAATTTCCAAATCTGCGAAGCACCAACC  272

Query  181  ACTC-TTCTCCCTCGTAGCTTCACCCTGAATTCCGCCACGACAACACGTGAACGTTGCCG  239
            || | |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  273  AC-CGTTCTCCCTCGTAGCTTCACCCTAAATTCGGCCACGACAACACGTGAACGTTGCCG  331

Query  240  GTTTGTCACAAGCTACTCACGTGGCGCCGGCAGCGGAGAAATCACGGTGGAAACGGCGGC  299
            ||||||||||  |       |||||||| |||||||||||||||||||||| ||| ||||
Sbjct  332  GTTTGTCACA--C-------GTGGCGCCAGCAGCGGAGAAATCACGGTGGAGACGACGGC  382

Query  300  GATGAGACGACAAATGGATCTCCGGAGAAATTACAGTTGTATGGTTATGGGAAGGATCGA  359
             |||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct  383  TATGAAACGACAGATGGATCTCCGGAGAAATTATAGTTGTATGGTTATGGGAAGGATTGA  442

Query  360  CGAAGAGAAGGTTTGTGATGAGTTTGAAGCAGAGGATTTGTTATTTGATTATACCaaaaa  419
             |||||||||||||||||| ||||||||| | || |   |      ||||||| ||||||
Sbjct  443  TGAAGAGAAGGTTTGTGATCAGTTTGAAG-A-AG-A---G------GATTATAGCAAAAA  490

Query  420  aagaaaaaTCGGTAGAGTTTTCACTACTCATCAACAATAA  459
            ||||||||||||| ||||||||||||||||||||||||||
Sbjct  491  AAGAAAAATCGGTGGAGTTTTCACTACTCATCAACAATAA  530



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5