BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358798

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67590.1 | Symbols: FRO1 | NADH-ubiquinone oxidoreductase-re...   760    0.0  


> AT5G67590.1 | Symbols: FRO1 | NADH-ubiquinone oxidoreductase-related 
| chr5:26958001-26959557 FORWARD LENGTH=738
Length=738

 Score =  760 bits (411),  Expect = 0.0
 Identities = 447/465 (96%), Gaps = 0/465 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGCTTCGTGCTACTACTCAAGGGACTAGCCGTATCGCGGCGACGCTCCGGCGTGTT  60
            ||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||||||
Sbjct  73   ATGGCGCTTTGTGCTACTACTCAAAGGACTATCCGTATAGCGGCGACGCTCCGGCGTGTT  132

Query  61   GCTCGGCCTTTCTCTACTGACGCGGTGGTTGAGTCGGATTACAAGCGTGGGGAGATCGGT  120
            ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  133  GCTCGACCTTTCGCTACTGACGCGGTGGTTGAGTCGGATTACAAGCGTGGTGAGATCGGT  192

Query  121  AAGGTCTCCGGAATCCCTGAGGAGCATCTTTCCCGGAAGGTGATAATATACTCACCTGCT  180
            ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct  193  AAGGTCTCCGGAATCCCAGAGGAGCATCTTTCTCGCAAGGTGATAATATACTCACCTGCT  252

Query  181  AGAACAGCTACCCAGTCAGGATCTGGAAAACTTGGAAAATGGAAGATTAACTTCGTCTCC  240
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  253  AGAACAGCTACCCAGTCAGGATCTGGAAAACTCGGAAAATGGAAGATTAACTTCGTCTCC  312

Query  241  ACCTTAAAGTGGGAGAATCCATTGATGGGCTGGACTTCCACAGGTGACCCCTATGCCAAT  300
            |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||
Sbjct  313  ACCTTAAAGTGGGAGAATCCGTTGATGGGATGGACTTCTACAGGTGACCCCTATGCTAAT  372

Query  301  GTTGGTGACTCTGCTCTTGCTTTTGATTCAGAAGAAGCTGCTAAGTCTTTTGCTGAGCGT  360
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  373  GTTGGTGACTCTGCTCTTGCTTTTGATTCTGAAGAAGCTGCTAAGTCTTTTGCTGAGCGT  432

Query  361  CATGGTTGGGATTATAAAGTCAAGAAGCCCAACACACCGTTATTGAAGGTCAAGTCTTAC  420
            ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct  433  CATGGTTGGGATTATAAGGTCAAGAAGCCCAACACACCATTATTGAAGGTCAAGTCTTAC  492

Query  421  TCGGACAACTTCAAGTGGAAAGGCAATCCTCAACCAGAAAACTGA  465
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  493  TCGGACAACTTCAAGTGGAAAGGCAATCCTCAACCAGAAAACTGA  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5