BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg358820

Length=525
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G67390.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   865    0.0  


> AT5G67390.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: Plant protein of unknown function 
(DUF863) (TAIR:AT1G69360.1); Has 1807 Blast hits to 1807 proteins 
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; 
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes 
- 339 (source: NCBI BLink). | chr5:26887670-26889238 REVERSE 
LENGTH=984
Length=984

 Score =  865 bits (468),  Expect = 0.0
 Identities = 511/531 (96%), Gaps = 6/531 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGAAGCTACTTAATCCGTACGATAAGCAGTGCATGAAAATGGCTATGCTTAAACAT  60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ATGGAGAAGCTTCTTAATCCGTACGATAAGCAGTGCATGAAAATGGCTATGCTTAAACAT  300

Query  61   GAAGAAACTTTCAAGCAACAGGTATATGAACTTCATAGATTATATCAAGTTCAGAAGATA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GAAGAAACTTTCAAGCAACAGGTATATGAACTTCATAGATTATATCAAGTTCAGAAGATA  360

Query  121  TTGATGAAGAACATGGAGATTAACAAATTTACTACCAAGAATAATCATGTAAACTCAGGT  180
            |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct  361  TTGATGAAGAACATGGAGATCAACAAATTTACTACCAAGAACAATCATGTAAATTCAGGT  420

Query  181  CTAGGAACATTCATCAGAAGAGTTGACCATGAGATTGACCGGCCGGCGAATTTCTCCGGT  240
            ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct  421  CTAGGAACATTCATCAGAAGAGTTGACAACGAGATTGACCGGCCGGCGAATTTCTCCGGT  480

Query  241  GGTAATAATA-TA--GAGATTATGGATGAGAGTGAGATCGAGTTAACTCTAGGTCCGTCG  297
            |||||||||| ||  |||||||||||||||||||||||||||||||| || ||||| |||
Sbjct  481  GGTAATAATAATATAGAGATTATGGATGAGAGTGAGATCGAGTTAACCCTTGGTCCCTCG  540

Query  298  TGTTACGGTGGTGATGAATTGATGAGGATGAACAAGAAGAAGAAAAAGAACTCTTTGCCG  357
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  541  TGTTACGGTGGTGATGAAATGATGAGGATGAACAAGAAGAAGAAAAAGAACTCTTTGCCG  600

Query  358  GAGATGATGGACGGAAATTTAAATTCCGGTCGCCGGAGTTTCTCTTCGTCTTCGACAGGA  417
            |||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||
Sbjct  601  GAGATGATGGACGGGAGTTTAAATTCCGGTCGCCGGAGTTTTTCTTCGTCTTCGACAGGA  660

Query  418  TCAAGTAATAACAATAACAACAATCTTGAAGAACAAGTGAGGCAAGAAAGAATGATGAAG  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  661  TCAAGTAATAACAATAACAACAATCTTGAAGAACAAGTGAGGCAAGAAAGAATGATGAAA  720

Query  478  CATCAGAAGCAGC--C-ATGGCTTCAAGCATTGACCTTGAATGTTATTTGA  525
            |||||||||||||  | ||||||||||||||||||||||||||||||||||
Sbjct  721  CATCAGAAGCAGCAGCCATGGCTTCAAGCATTGACCTTGAATGTTATTTGA  771



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25117073500


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5