BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358826
Length=2133
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67340.1 | Symbols: | ARM repeat superfamily protein | chr5... 3271 0.0
> AT5G67340.1 | Symbols: | ARM repeat superfamily protein | chr5:26864556-26867602
FORWARD LENGTH=2412
Length=2412
Score = 3271 bits (1771), Expect = 0.0
Identities = 2019/2136 (95%), Gaps = 27/2136 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGTGTCTTGGTTACGAGTTCTTCTAGATAACATCTCCTCCTATCTAACTTTATCA 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 149 ATGGAGGTGTCTTGGTTAAGAGTTCTTCTAGATAACATCTCCTCCTATCTAAGTTTATCA 208
Query 61 TCTATGGACGACTTATCTTCAAACCCTGCTCTTAAGTACTACACCAGAGGTGAAGAGATA 120
||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 209 TCTATGGACGATTTATCTTCAAACCCTGCTCATAAGTACTACACCAGAGGAGAAGATATA 268
Query 121 TCAAACCTTCTCAAGCCTGTTCTTGAGAACCTCATTGACTCTGACGCTGCTCCTAGCGAA 180
||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 269 GGAAAGCTTATCAAGCCTGTTCTTGAGAACCTCATTGACTCTGACGCGGCTCCTAGCGAG 328
Query 181 TTGCTCAACAACGGTTTCGAAGAATTAGCTCAATACTG-TGATGAACTAAGAGAACAGTT 239
||||| ||||| ||||| |||||||||||||||||| | ||||||||| |||||||||||
Sbjct 329 TTGCTTAACAATGGTTTTGAAGAATTAGCTCAATAC-GTTGATGAACTTAGAGAACAGTT 387
Query 240 TGAGAGTTGGCAACCTCTTTCAACTAGAATCTTTTATGTTCTTCGAATTGAGTCATTAGC 299
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 388 TCAGAGTTGGCAACCTCTTTCAACTAGAATCTTTTATGTTCTTCGAATTGAATCATTAGC 447
Query 300 ATCAAAGTTGCGAGAATCCAGTTTGGAAGTCTTTCAGCTCCTCAAACACTGCGAACAACA 359
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 ATCAAAGTTACGAGAATCCAGTTTGGAAGTCTTTCAGCTCCTCAAACACTGCGAACAACA 507
Query 360 TTTACCTGCTGACACT-ATTTCACCATCTTTTGAGGAGTGCATAGAATTGGTGAAGTTAG 418
||| ||||||||| | || ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 508 TTTGCCTGCTGAC-TTGATCTCACCTTCTTTTGAGGAGTGCATTGAATTGGTGAAGTTAG 566
Query 419 TGGCAAGAGACGAAATTTCGTATACTATTGATCAAGCTCTAAAAGATCAAAAGAATGGTG 478
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 567 TGGCAAGAGACGAAATATCGTATACTATTGATCAAGCTCTAAAAGATCAAAAGAAAGGTG 626
Query 479 TTGGTCCTACTTCAGAGGTTCTGGTGAAAATTGCTGAGAGTACTGGTTTAAGATCCAACC 538
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 627 TTGGACCTACTTCAGAGGTTCTGGTGAAAATTGCCGAGAGTACTGGTTTAAGATCCAACC 686
Query 539 AGGAGATTCTTATTGAGGGTGTGGTACTTACAAATATGAAGGAGGATGCTGAGCTTACCG 598
||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 687 AGGAGATTCTTGTTGAAGGTGTGGTACTTACAAACATGAAGGAGGATGCTGAGCTTACCG 746
Query 599 ATAATGACACCGAGGCTGAGTATCTAGACGGTTTGATCTCTCTAACAACTCGAATGCATG 658
||||||||||||| || |||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 747 ATAATGACACCGAAGCCGAGTATCTAGACGGATTGATCTCTCTAACAACACAAATGCATG 806
Query 659 AGTACCTTAGCGACATAAAGCAGGCTCAGTTACGTTGTCCAGTACGCGTACCTTCTGACT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 807 AGTACCTTAGCGACATAAAGCAGGCTCAGTTACGTTGTCCAGTACGCGTACCTTCTGATT 866
Query 719 TCCGCTGCTCTCTATCTCTTGAGCTTATGACTGATCCAGTCATTGTGGCATCTGGTCAAA 778
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 867 TCCGCTGCTCTCTATCTCTTGAGCTTATGACTGATCCAGTCATTGTAGCATCTGGTCAAA 926
Query 779 CATACGAACGGGTTTTTATCCAGAAATGGATCGATATGGGACTCATGGTTTGTCCAAAGA 838
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 CATTCGAACGGGTTTTTATCCAGAAATGGATCGATATGGGACTCATGGTTTGTCCAAAGA 986
Query 839 CAAGGCAGTCTTTATCTCATACCACTTTGACTCCTAATTTCATTGTCAGGGCTTTTCTTG 898
|||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 987 CAAGGCAGGCTTTATCTCATACCACTTTGACACCTAATTTCATTGTCAGAGCTTTTCTTG 1046
Query 899 CCAGTTGGTGTGAAACTAACAATGTCTATCCTCCTGATCCATTGGAGTTGATTCACTCAA 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 CAAGTTGGTGTGAAACTAACAATGTCTATCCTCCTGATCCATTGGAGTTGATTCACTCAA 1106
Query 959 GTCAGCCATTCCCTCTTCTTCTTGAATCAGTGAGAGCTTCATCATCAGAGAATTCATCGC 1018
|| ||||||||||||||||| ||||||||||||||||||||||||||||| | || ||
Sbjct 1107 GTGAGCCATTCCCTCTTCTTGTTGAATCAGTGAGAGCTTCATCATCAGAG-A---ATGGC 1162
Query 1019 CAATAAAGAATGGCCAGGCAGATGCAGAGGAACTGCCTCAGGTCTTTAGTAGGTCTGCTT 1078
| || ||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1163 C-ATTCAGAAT---C-TTTAGATGCAGAGGAACTGCGTCAGGTCTTTAGTAGGTCTGCTT 1217
Query 1079 CTGCACCAGGCATTGTCTCTGAAGTGGTTTGCAAAACCAAAAGAAGCACTAATGCTACTG 1138
| || |||||||||||||||||||||||||||||||||||||||| || || | | ||
Sbjct 1218 CGGCGCCAGGCATTGTCTCTGAAGTGGTTTGCAAAACCAAAAGAA--AC-AA--C-AATG 1271
Query 1139 CTGCTGCAGATAGATCAGTGTCACAGGCACGGAGTAATACCCCTTGGAAATTTCCAGAAG 1198
||||||||||||||||| || | |||||||||||||||||||||||||||||||||
Sbjct 1272 CTGCTGCAGATAGATCACTG----A--CACGGAGTAATACCCCTTGGAAATTTCCAGAAG 1325
Query 1199 AGAGGCATTGGCGTCACCCCGGGATCATCCCAGCGACCATAAGAGAAACAGGAAGCAGTT 1258
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1326 AGAGGCATTGGCGTCACCCCGGGATCATCCCAGCGACCGTAAGAGAAACAGGAAGCAGTT 1385
Query 1259 CAAGTATCGAAACCGAGGTGAAGAAACTCATTGAGGATCTCAAGAGTTCTTCATTGGATA 1318
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1386 CAAGTATCGAAACCGAGGTGAAGAAACTCATTGATGATCTCAAGAGTTCTTCATTGGATA 1445
Query 1319 CACAGAGAGATGCTACGGCTCGAATCAGGATACTATCAAGAAACAGTACAGACAATCGCA 1378
|||||||||| || || ||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1446 CACAGAGAGAGGCCACAGCTAGAATCAGGATACTAGCAAGAAACAGTACAGACAATCGCA 1505
Query 1379 TTGTGATTGCAAGGTGCGGAGCAATCCCTTCGTTAGTGAGTCTTCTTTATTCCACGGATG 1438
|||| ||||| |||||| |||||||||||||||||| ||||||||||| || |||||||
Sbjct 1506 TTGTCATTGCGCGGTGCGAAGCAATCCCTTCGTTAGTCAGTCTTCTTTACTCAACGGATG 1565
Query 1439 AGAGAATCCAAGCAGACGCAGTGACTTGCTTACTAAACTTATCCATCAACGACAACAACA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 AGAGAATCCAAGCAGACGCAGTGACTTGCTTACTAAACTTATCCATCAACGACAACAACA 1625
Query 1499 AGTCCCTCATCGCGGAAAGTGGAGCTATCGAACCGCTCATTCACGTTCTCAAAACAGGAT 1558
||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1626 AGTCCCTCATCGCGGAAAGTGGAGCCATCGTACCGCTTATTCACGTTCTCAAAACAGGAT 1685
Query 1559 ACTTAGAAGAAGCTAAAGCAAACTCAGCAGCAACTCTATTCAGCTTATCGGTGATCGAAG 1618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1686 ACTTAGAAGAAGCTAAAGCAAACTCAGCAGCAACTCTATTCAGCTTGTCGGTGATCGAAG 1745
Query 1619 AGTACAAGACAGAGATAGGAGAAGCAGGAGCTATAGAGCCACTTGTTGATCTCTTGGGAA 1678
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1746 AGTACAAGACAGAGATAGGAGAAGCAGGAGCTATAGAGCCACTTGTTGACCTCTTAGGAA 1805
Query 1679 GTGGAAGTCTCAGTGGGAAGAAAGATGCAGCCACGGCTTTATTCAACCTCTCAATACACC 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 GTGGAAGTCTCAGTGGGAAGAAAGATGCAGCCACGGCTTTATTCAACCTCTCAATACACC 1865
Query 1739 ATGAGAACAAAAC-AAAGGTAATCGAAGCTGGAGCAGTGAGATACTTAGTAGAATTGATG 1797
||||||||||||| |||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1866 ATGAGAACAAAACGAAAG-TAATCGAAGCTGGAGCAGTGAGATACTTAGTTGAACTGATG 1924
Query 1798 GATCCTGCTTTTGGAATGGTGGAGAAAGCTGTGGTAGTTCTGGCGAATCTTGCAACGGTT 1857
|||||||||||||| |||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1925 GATCCTGCTTTTGGGATGGTGGAGAAAGCTGTGGTGGTGCTAGCGAATCTTGCAACGGTT 1984
Query 1858 AGAGAAGGAAAGATTGCGATTGGCGAAGAAGGAGGAATACCGGTATTGGTGGAAGTTGTG 1917
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1985 AGAGAAGGAAAGATTGCGATAGGCGAAGAAGGAGGAATACCGGTATTGGTGGAAGTTGTG 2044
Query 1918 GAGTTAGGATCAGCAAGAGGCAAAGAGAATGCAACTGCAGCACTGTTGCAGCTTTGTACG 1977
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2045 GAGTTAGGTTCAGCAAGAGGCAAAGAGAATGCAACTGCAGCACTATTGCAGCTTTGTACG 2104
Query 1978 CATAGCCCGAAATTCTGCAACAGTGTCATAAGAGAAGGAGTGATTCCACCTCTAGTGGCA 2037
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 2105 CATAGCCCGAAATTCTGCAACAATGTCATAAGAGAAGGAGTGATTCCACCTCTTGTGGCA 2164
Query 2038 CTTACTAAATCAGGAACAGCTAGAGGCAAAGAGAAGGCACAGAATCTTCTAAAGTACTTT 2097
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2165 CTTACTAAATCAGGAACAGCTAGAGGCAAAGAGAAGGCACAGAATCTTCTGAAGTACTTT 2224
Query 2098 AAAGTACACAGACAAAACAATCAGAGGAGAGGCTGA 2133
|||| ||||||||||| |||||||||||||||||||
Sbjct 2225 AAAGCACACAGACAAAGCAATCAGAGGAGAGGCTGA 2260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105772548315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5