BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358854
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67050.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2039 0.0
> AT5G67050.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:26759460-26761197 REVERSE LENGTH=1488
Length=1488
Score = 2039 bits (1104), Expect = 0.0
Identities = 1331/1440 (92%), Gaps = 18/1440 (1%)
Strand=Plus/Plus
Query 7 AACAGCGACGATGACAACGAGCCGAGAGGATATCTAATTCTCCGACCGGAAGAGCTCCGG 66
||||||||||||||| | || |||||||||||||| ||||||||||||||||||||||||
Sbjct 39 AACAGCGACGATGACGATGAACCGAGAGGATATCTGATTCTCCGACCGGAAGAGCTCCGG 98
Query 67 CCATGGGAACTTTTTCGTTTGTTATTCTCCCGCGATATCGACAAGCCGAGATCAGTCGAT 126
|||||||||||| ||||||||||||||||| | ||||| || || ||||||||||| |||
Sbjct 99 CCATGGGAACTTGTTCGTTTGTTATTCTCCGGAGATATAGAGAAACCGAGATCAGTGGAT 158
Query 127 AGCTCAGAAACCAAAGAACCA-AGTTTCAGACGTCGATGGCTTATCTTCGTCTCTCTCGT 185
||||| |||||| ||||| || |||||| ||| ||||||||||||||| |||||||||||
Sbjct 159 AGCTCGGAAACCGAAGAA-CACAGTTTCCGACATCGATGGCTTATCTTTGTCTCTCTCGT 217
Query 186 CCTTCTCAAGCTACTTCGATTATTCTCCGAGCTTTTAGCTCTCCTTGGCTCCGCCTTAGA 245
|||||||||||| |||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 218 CCTTCTCAAGCTTCTTCGATTCTTCTCCAAGCTTTTAGCTCTCGTTGGCTCCGCCTTAGA 277
Query 246 ATTCCTC-TTAAACTTCCTCTCCGCTAACTCTTTATCCGGTTTCTTTCTCCGAGGAGAAG 304
||| ||| ||||||||||||||| ||||||||| |||||| |||| || ||||||||||
Sbjct 278 ATT-CTCTTTAAACTTCCTCTCCAATAACTCTTTCTCCGGTCTCTTCCTTCGAGGAGAAG 336
Query 305 TAGTGGTGCCAAAAAC-AACATCAGAGAATTATCAGTCATTTATCGGACATTTAGACACG 363
| ||| |||| ||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 337 TGGTGATGCC-GCAACGGACATCGGAGAATTATCAGTCATTTATCGGACATTTAGACACG 395
Query 364 AGAATAAGTTTAGACAAGACGATGAATCGCGAAGACGGAGACAAATACTATGCTGCATTG 423
|| |||||||||||| |||| ||||||| ||||| ||||| ||||||||||||||||||
Sbjct 396 AGGGTAAGTTTAGACATGACGTTGAATCGTGAAGATGGAGAGAAATACTATGCTGCATTG 455
Query 424 TCCATTATGGCTTCAAAAATTGCCTACGAAAACTCAGCCCGTATTAAAAATGTCGTCGAG 483
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 456 TCCATTATGGCTTCAAAAATTGCCTACGAAAACGCAGCCCGTATTAAACATGTCGTCGAG 515
Query 484 AATCATTGGAATATGAAGTATTTAGGTCTCGTTGACTATTGGAACGAGTACCAAGAAAAG 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 AATCACTGGAATATGAAGTATTTAGGTCTCGTTGACTATTGGAACGAGTACCAAGAAAAG 575
Query 544 GAAACAACACAAGCCTTTATAATGTCTACAGATAAAACATCAACACCATCCAACTGTCAA 603
||||||||||||||||||||||||||||| || ||||| ||||| ||||||| |||||
Sbjct 576 GAAACAACACAAGCCTTTATAATGTCTACTGACGAAACAACAACAAGATCCAACGGTCAA 635
Query 604 GAAACGACGGTGGTGGTTGCATTTAGAGGAACAGAACCGTTTAATTCCGAGGATTGGTGT 663
||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||
Sbjct 636 GAAACGACGGTGGTGGTTGCATTTAGAGGCACAGAACTGTTTAATTCCGAAGATTGGTGT 695
Query 664 TCAGATTTCGACATTACATGGTATGAGCTCCCAAACATTGGGAAGATCCATGGTGGTTTC 723
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 696 TCAGATTTCGACATTACATGGTTTGAGCTCCCAAACATTGGGAATATCCATGGTGGTTTC 755
Query 724 ATGAAAGCTCTCGGGCTTCAAAACAATTGTAGTTGGCCTAAGGAACCTCTCCCAAACCCT 783
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 756 ATGAAAGCTCTAGGGCTTCAAAACAATTGTAGTTGGCCTAAAGAACCTCTCTCAAACCCT 815
Query 784 GATCGATTATCCCCTTTAGCTTACTACTCAATCAGAGACTCTTTGAAAACTCTGATCGCT 843
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 816 GATCGAAAATCCCCTTTAGCTTACTACTCAATAAGAGACTCTTTGAAAACTCTGATCGCT 875
Query 844 CAAAACAAAAACACTAAGTTTGTTCTGACCGGTCATAGCTTAGGAGGAGCCCTTGCGATA 903
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 876 CAAAACAAAAACACCAAGTTTGTTCTGACCGGTCATAGCTTAGGAGGAGCCCTCGCGATA 935
Query 904 TTGTTCACGGCTGTGCTTGTGATTCACAACGAGACCGAGTTATTGGAGAGGATTCAAGGG 963
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 936 TTGTTCACGGCTGTGCTTGTGATTCACCACGAGACCGAGTTGTTGGAGAGGATTCAAGGG 995
Query 964 GTGTATACTTATGGACAACCTAGGGTTGGAGATTCCAAGTTTGGTGACTTTATGGAGAAG 1023
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 996 GTGTATACTTATGGACAGCCTAGGGTTGGAGATTCCAAGTTTGGTGAATTTATGGAGAAG 1055
Query 1024 AAATTAGAAGAATATGATGTCAAGTATTATAGATTTGTTTATAATAACGACATTGTTCCA 1083
||||||||| ||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AAATTAGAAAAATATAATATAAAGTATTATAGATTTGTTTATAATAACGACATTGTTCCA 1115
Query 1084 AAATTGCCGTACGATGATAAGGATTTGATGTTCAAACACTTTGGCACTTGCATCTACTAC 1143
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1116 AGATTGCCGTACGATGATAAGGATTTGATGTTCAAACACTTTGGCACTTGCATCTACTAC 1175
Query 1144 GACCAAGA-CTATCAACCAAAGGTTTTGAGAGAGCAATCGCAATCGGACGAAAACttttt 1202
||||| || ||||||| ||||||| |||||||||||||| | |||||||||||||
Sbjct 1176 GACCA-GAACTATCAAGCAAAGGTAATGAGAGAGCAATCG-----G-ACGAAAACTTTTT 1228
Query 1203 -ttCGTTGCGTGGGATTATAAAGATGGTGTACATTGCAATATTGGAGTTTATAAGAAGCT 1261
|| |||||| ||||||||||||||| ||| | ||| ||||||||||||||||||||||
Sbjct 1229 CTT-GTTGCGAGGGATTATAAAGATGATGTGGAGTGCTATATTGGAGTTTATAAGAAGCT 1287
Query 1262 TCACTATTGTGACTGAGAAGGGATCGGAGTTTAGGGAAGGTTGGTTGTTGAAGGGTGGTA 1321
||||||| ||| |||||||||| ||||||| || ||||| |||||||||||||||||||
Sbjct 1288 TCACTATAGTGGCTGAGAAGGGCTCGGAGTACAGTGAAGGATGGTTGTTGAAGGGTGGTA 1347
Query 1322 GGGCAATGGGGATTATAGTCCCTGGTGTTTCAAATCATACACCTCAAGATTATGTGAATG 1381
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 GGGCTTTGGGGATTATAGTCCCTGGTGTTTCAAATCATACACCTCAAGATTATGTGAATG 1407
Query 1382 CCACTAGATTAACCCCTCCTTGTGTTTTCCAAAT-TCATAGAGATGTATCCATAACATAA 1440
||||||||||||||| |||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1408 CCACTAGATTAACCCTTCCTTGTGTTTTCCAAGTCT-ATAGAGATGTATCCATAACATAA 1466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5