BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg358861 Length=822 Score E Sequences producing significant alignments: (Bits) Value AT5G66990.1 | Symbols: | RWP-RK domain-containing protein | ch... 1242 0.0 > AT5G66990.1 | Symbols: | RWP-RK domain-containing protein | chr5:26744257-26745362 REVERSE LENGTH=834 Length=834 Score = 1242 bits (672), Expect = 0.0 Identities = 785/837 (94%), Gaps = 18/837 (2%) Strand=Plus/Plus Query 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60 ||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60 Query 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120 ||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| Sbjct 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120 Query 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180 ||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180 Query 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240 Query 241 GCAATCTCTA--A---------T--ATA-AT-GAGCGGATGGTGGAATGATAATAATGGT 285 || ||||||| | | ||| || ||| ||||||||||| || ||||||||| Sbjct 241 GCTATCTCTAGTACTTTCTCTCTAGATATATCGAGTGGATGGTGGAACGAGAATAATGGT 300 Query 286 AACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGGA 345 ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 301 AACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGGA 360 Query 346 GATCCAAAGATGGAGAAAATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAACA 405 |||||||| |||||| ||||||||||||||||||||||||| | || |||||||||||| Sbjct 361 GATCCAAATATGGAGCAAATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAACA 417 Query 406 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTTTG 465 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| | || Sbjct 418 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATATG 477 Query 466 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 537 Query 526 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 538 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 597 Query 586 CACCGTAAGCTCACGAGCCTTAATGCTCTAATTGCTAATCTCAAGGACTTATTAGGGAAC 645 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 598 CACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGAAC 657 Query 646 ACGGAGGGGAAAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 705 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 ACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 717 Query 706 AAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAAGA 765 ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 718 AAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAAGA 777 Query 766 CAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 822 |||||||||||||||||||||||||||| |||| |||||||||| |||||||||||| Sbjct 778 CAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40036615159 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5