BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg358861
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT5G66990.1 | Symbols: | RWP-RK domain-containing protein | ch... 1242 0.0
> AT5G66990.1 | Symbols: | RWP-RK domain-containing protein |
chr5:26744257-26745362 REVERSE LENGTH=834
Length=834
Score = 1242 bits (672), Expect = 0.0
Identities = 785/837 (94%), Gaps = 18/837 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAAAAACCTCTAATGGTCTGGTCAGAGGCCAACAACTATGAATCATTCCTT 60
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGCTGATCAAAGACCTCTAATGACCTGGTTAGAGGCCAACAACTATGAATCATTCCTT 60
Query 61 CAAGAAGACATATTCTCGTTTCTTGATCAATCACTTTCCATCGATCCTCACAGCTCTTTC 120
||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 61 CAAGAAGACATATTCTCGTTTCTCGATCAATCACTTTTCGTCGATCCTCACAGCTCTTTC 120
Query 121 ATTAACCCTTTTAAGGATTTTCAAACCCAAACTTGGTTTTCTTTCCAAGACAGCATTGTT 180
||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 121 ATTGACCCTTTTAAGGATTTTCAAACCCAAAATTGGTTTTCTCTCCAAGACAGCATTGTT 180
Query 181 AATCCTATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AATCATATATCTACTACCTTTGCGGCTGATCATACGTTTCTGGCTTCACTTGATCTTGAA 240
Query 241 GCAATCTCTA--A---------T--ATA-AT-GAGCGGATGGTGGAATGATAATAATGGT 285
|| ||||||| | | ||| || ||| ||||||||||| || |||||||||
Sbjct 241 GCTATCTCTAGTACTTTCTCTCTAGATATATCGAGTGGATGGTGGAACGAGAATAATGGT 300
Query 286 AACTACAATAACCAGGTCGAACCAATTCTTGATGATATTTCAAGAACTAATACCATGGGA 345
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 301 AACTACAATAACCAGGTCGAACCAAACCTTGATGAAATTTCAAGAACTAATACCATGGGA 360
Query 346 GATCCAAAGATGGAGAAAATATTGCATGAAGATGTTAACACAACTATAAAAGAGAAAACA 405
|||||||| |||||| ||||||||||||||||||||||||| | || ||||||||||||
Sbjct 361 GATCCAAATATGGAGCAAATATTGCATGAAGATGTTAACAC-A--ATGAAAGAGAAAACA 417
Query 406 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGACATCAATAGTTTG 465
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||
Sbjct 418 AGCCAGAAGAGGATAATTATGAAGAGGCGATATAGAGAAGATGGAGTCATCAATAATATG 477
Query 466 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TCAAGGGAAATGATGAAGCAGTACTTCTACATGCCGATAACTAAAGCAGCCAAGGAGCTT 537
Query 526 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AACATTGGTGTAACCCTCTTGAAGAAAAGATGTCGTGAGTTAGGTATTCCTCGTTGGCCT 597
Query 586 CACCGTAAGCTCACGAGCCTTAATGCTCTAATTGCTAATCTCAAGGACTTATTAGGGAAC 645
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 598 CACCGTAAGCTCACGAGCCTAAACGCTCTAATTGCTAATCTCAAGGACTTGTTAGGGAAC 657
Query 646 ACGGAGGGGAAAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 705
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ACGAAGGGGAGAACGCCCAAGAGTAAGCTGAGGAACGCTTTGGAGCTTTTGGAGATGGAG 717
Query 706 AAGAAGATGATTGAGGAAGTTCCGGATTTGGAATTTGGGGACAAGACTAAGAGGTTAAGA 765
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 718 AAGAAGATGATTGAGGAAGTTCCCGATTTGGAATTTGGGGATAAGACTAAGAGGTTAAGA 777
Query 766 CAGGCTTGCTTCAAGGCTAAATACAAACAGAGACGGCTCTTCTCGTCTTCTTCATGA 822
|||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct 778 CAGGCTTGCTTCAAGGCTAAATACAAACGGAGAAGGCTCTTCTCATCTTCTTCATGA 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5